TCDA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the PDGs in each cancer type

Show entries each page Jump to page Total Page: 541 Total entries: 10811
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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
BRCA	TCGA-BH-A18V-06A	TCGA-BH-A18V	NAGA\|TCF20	NAGA	TCF20	22	22	-1	-1	2	11	9	0.08	42456928	42575708	tier2	In-frame	11076	NA	0.36205
BRCA	TCGA-AC-A2BM-01A	TCGA-AC-A2BM	NAGA\|WBP2NL	NAGA	WBP2NL	22	22	-1	1	10	18	14	1	42458831	42426724	tier1	CDS-3UTR	11077	NA	0.33242
SKCM	TCGA-EE-A2GE-06A	TCGA-EE-A2GE	TGM2\|ACVRL1	TGM2	ACVRL1	20	12	-1	1	2	2	2	0.17	36756863	52306155	tier3	3UTR-5UTR	17750	NA	0
LGG	TCGA-E1-A7YN-01A	TCGA-E1-A7YN	LIPN\|MINPP1	LIPN	MINPP1	10	10	1	1	5	4	2	0.36	90530748	89311839	tier1	Out-of-frame	9369	NA	0.3423
LUSC	TCGA-63-6202-01A	TCGA-63-6202	BMPR2\|ATG4B	BMPR2	ATG4B	2	2	1	1	10	1	1	100	203332412	242590425	tier3	In-frame	2140	NA	0.38129
LUAD	TCGA-55-7911-01A	TCGA-55-7911	BMPR2\|AC079354.1	BMPR2	AC079354.1	2	2	1	1	12	6	6	0.1	203242273	203003155	tier1	CDS-3UTR	2139	NA	0.37696
LUAD	TCGA-78-7539-01A	TCGA-78-7539	BMPR2\|C2orf67	BMPR2	C2orf67	2	2	1	-1	28	17	16	0.64	203242273	210962931	tier1	Out-of-frame	2141	NA	0
PRAD	TCGA-HC-8258-01A	TCGA-HC-8258	BMPR2\|MARCH4	BMPR2	MARCH4	2	2	1	-1	27	14	13	1.8	203407170	217124402	tier1	Out-of-frame	2142	NA	0
UCS	TCGA-NA-A4R1-01A	TCGA-NA-A4R1	BMPR2\|NOP58	BMPR2	NOP58	2	2	1	1	59	37	32	0.83	203242273	203139836	tier1	Out-of-frame	2143	NA	0.37696
LGG	TCGA-FG-5963-01A	TCGA-FG-5963	TAP2\|VARS	TAP2	VARS	6	6	-1	-1	2	2	2	0.25	32797177	31760897	tier4	In-frame	17411	NA	0
COAD	TCGA-A6-A56B-01A	TCGA-A6-A56B	SPIN3\|HECTD2	SPIN3	HECTD2	X	10	-1	1	4	1	1	0.65	57021156	93185038	tier2	NA	16727	non-validated	0
SKCM	TCGA-EB-A44Q-06A	TCGA-EB-A44Q	HLA-DRA\|EEA1	HLA-DRA	EEA1	6	12	1	-1	2	16	9	0.45	32412823	93229203	tier3	NA	7836	NA	0.37382
SKCM	TCGA-EE-A29T-06A	TCGA-EE-A29T	HLA-DRA\|SNW1	HLA-DRA	SNW1	6	14	1	-1	2	6	3	0.34	32412823	78189203	tier4	3UTR-CDS	7837	NA	0.36625
SARC	TCGA-DX-A2IZ-01A	TCGA-DX-A2IZ	RAGE\|MUCL1	RAGE	MUCL1	14	12	-1	1	155	115	85	0.11	102771299	55248900	tier1	In-frame	14194	non-validated	0
HNSC	TCGA-CR-5243-01A	TCGA-CR-5243	RAGE\|PRND	RAGE	PRND	14	20	-1	1	2	2	2	0.27	102717149	4705187	tier2	CDS-5UTR	14195	NA	0
LUAD	TCGA-NJ-A55A-01A	TCGA-NJ-A55A	RAGE\|CINP	RAGE	CINP	14	14	-1	-1	2	1	1	0.25	102771299	102825924	tier3	In-frame	14193	NA	0
LIHC	TCGA-EP-A2KA-01A	TCGA-EP-A2KA	STK19\|LY6G6D	STK19	LY6G6D	6	6	1	1	44	1	1	0.11	31947330	31683279	tier4	Out-of-frame	17057	validated	0
LIHC	TCGA-EP-A2KA-01A	TCGA-EP-A2KA	STK19\|XXbac-BPG32J3.19	STK19	XXbac-BPG32J3.19	6	6	1	1	43	23	22	0.26	31947330	31683279	tier1	Out-of-frame	17058	validated	0
SARC	TCGA-FX-A3TO-01A	TCGA-FX-A3TO	EHMT2\|ATF6B	EHMT2	ATF6B	6	6	-1	-1	2	3	3	0.009	31848791	32089125	tier3	Out-of-frame	5412	NA	0.37916
PRAD	TCGA-KC-A7F5-01A	TCGA-KC-A7F5	SLC44A4\|OGT	SLC44A4	OGT	6	X	-1	1	2	15	9	1.8	31830969	70782980	tier4	3UTR-CDS	16233	NA	0

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