Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| PRAD | TCGA-FC-A4JI-01A | TCGA-FC-A4JI | CAPZA2|C3orf26 | CAPZA2 | C3orf26 | 7 | 3 | 1 | 1 | 2 | 4 | 3 | 100 | 116528244 | 99865817 | tier2 | In-frame | 2979 | NA | 0 |
| SARC | TCGA-DX-A6BG-01A | TCGA-DX-A6BG | TOP1|LYZ | TOP1 | LYZ | 20 | 12 | 1 | 1 | 7 | 3 | 3 | 0.058 | 39729993 | 69743888 | tier1 | Out-of-frame | 18443 | NA | 0 |
| BRCA | TCGA-E2-A14R-01A | TCGA-E2-A14R | TOP1|PZP | TOP1 | PZP | 20 | 12 | 1 | -1 | 14 | 10 | 9 | 2.1 | 39690130 | 9356547 | tier1 | In-frame | 18444 | NA | 0 |
| HNSC | TCGA-MZ-A7D7-01A | TCGA-MZ-A7D7 | TOP1|CA10 | TOP1 | CA10 | 20 | 17 | 1 | -1 | 7 | 18 | 16 | 0.45 | 39658095 | 49825178 | tier1 | Out-of-frame | 18441 | NA | 0 |
| LUSC | TCGA-6A-AB49-01A | TCGA-6A-AB49 | TOP1|SLC2A10 | TOP1 | SLC2A10 | 20 | 20 | 1 | 1 | 5 | 6 | 5 | 0.58 | 39746936 | 45362395 | tier1 | Out-of-frame | 18445 | NA | 0 |
| BRCA | TCGA-C8-A273-01A | TCGA-C8-A273 | TOP1|C17orf64 | TOP1 | C17orf64 | 20 | 17 | 1 | 1 | 163 | 95 | 90 | 0.44 | 39729993 | 58503144 | tier1 | In-frame | 18440 | NA | 0 |
| LUAD | TCGA-05-4244-01A | TCGA-05-4244 | TOP1|CDH4 | TOP1 | CDH4 | 20 | 20 | 1 | 1 | 56 | 48 | 45 | 0.44 | 39658095 | 60318619 | tier1 | In-frame | 18442 | NA | 0 |
| ESCA | TCGA-V5-A7RE-01A | TCGA-V5-A7RE | MAP3K3|DBF4B | MAP3K3 | DBF4B | 17 | 17 | 1 | 1 | 6 | 27 | 27 | 0.51 | 61730016 | 42824451 | tier1 | Out-of-frame | 9867 | NA | 0.38115 |
| KIRP | TCGA-2Z-A9JI-01A | TCGA-2Z-A9JI | MAP3K3|BRIP1 | MAP3K3 | BRIP1 | 17 | 17 | 1 | -1 | 7 | 15 | 15 | 2.7 | 61744420 | 59763526 | tier1 | In-frame | 9866 | NA | 0.37963 |
| LGG | TCGA-FG-A87Q-01A | TCGA-FG-A87Q | MAP3K3|TANC2 | MAP3K3 | TANC2 | 17 | 17 | 1 | 1 | 3 | 6 | 5 | 7.1 | 61744420 | 61465996 | tier1 | Out-of-frame | 9869 | NA | 0.38139 |
| LUSC | TCGA-O2-A52S-01A | TCGA-O2-A52S | MAP3K3|FCHSD2 | MAP3K3 | FCHSD2 | 17 | 11 | 1 | -1 | 12 | 5 | 4 | 0.22 | 61710162 | 72726930 | tier1 | CDS-5UTR | 9868 | NA | 0.38241 |
| BRCA | TCGA-BH-A0HY-01A | TCGA-BH-A0HY | SREBF2|ACO2 | SREBF2 | ACO2 | 22 | 22 | 1 | 1 | 68 | 49 | 43 | 0.57 | 42229362 | 41918834 | tier1 | In-frame | 16830 | NA | 0 |
| BRCA | TCGA-C8-A26Y-01A | TCGA-C8-A26Y | SREBF2|FMNL2 | SREBF2 | FMNL2 | 22 | 2 | 1 | 1 | 26 | 30 | 28 | 4 | 42290941 | 153463853 | tier1 | Out-of-frame | 16832 | NA | 0 |
| LUAD | TCGA-99-AA5R-01A | TCGA-99-AA5R | SREBF2|EFCAB6 | SREBF2 | EFCAB6 | 22 | 22 | 1 | -1 | 7 | 5 | 5 | 0.023 | 42276996 | 43950976 | tier1 | Out-of-frame | 16831 | NA | 0 |
| LUAD | TCGA-49-AARE-01A | TCGA-49-AARE | SREBF2|MEI1 | SREBF2 | MEI1 | 22 | 22 | 1 | 1 | 38 | 24 | 23 | 0.11 | 42264796 | 42166690 | tier1 | In-frame | 16833 | NA | 0 |
| LUAD | TCGA-97-8175-01A | TCGA-97-8175 | SREBF2|PPAPDC1A | SREBF2 | PPAPDC1A | 22 | 10 | 1 | 1 | 139 | 87 | 76 | 0.31 | 42229362 | 122334643 | tier1 | In-frame | 16834 | NA | 0 |
| LUSC | TCGA-56-A5DR-01A | TCGA-56-A5DR | SREBF2|RNF214 | SREBF2 | RNF214 | 22 | 11 | 1 | 1 | 10 | 4 | 3 | 0.58 | 42281015 | 117150624 | tier1 | Out-of-frame | 16835 | NA | 0 |
| BLCA | TCGA-GC-A3RB-01A | TCGA-GC-A3RB | L3MBTL3|WDR37 | L3MBTL3 | WDR37 | 6 | 10 | 1 | 1 | 2 | 1 | 1 | 0.74 | 130343450 | 1118056 | tier2 | 5UTR-5UTR | 9176 | NA | 0.36359 |
| SARC | TCGA-DX-A1KY-01A | TCGA-DX-A1KY | DMD|LIX1L | DMD | LIX1L | X | 1 | -1 | 1 | 5 | 8 | 8 | 0.57 | 31279072 | 145487304 | tier1 | In-frame | 4908 | NA | 0.36997 |
| SARC | TCGA-DX-A240-01A | TCGA-DX-A240 | DMD|TMEM117 | DMD | TMEM117 | X | 12 | -1 | 1 | 2 | 2 | 2 | 0.4 | 32536125 | 44605073 | tier2 | In-frame | 4909 | validated | 0.36938 |
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