Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUAD | TCGA-MP-A4T6-01A | TCGA-MP-A4T6 | CDC42BPB|C14orf182 | CDC42BPB | C14orf182 | 14 | 14 | -1 | -1 | 6 | 4 | 4 | 0.19 | 103523336 | 50459591 | tier1 | Out-of-frame | 3339 | NA | 0 |
| LUSC | TCGA-NC-A5HI-01A | TCGA-NC-A5HI | CDC42BPB|ZFYVE1 | CDC42BPB | ZFYVE1 | 14 | 14 | -1 | -1 | 20 | 20 | 16 | 0.31 | 103452824 | 73465023 | tier1 | In-frame | 3344 | NA | 0.36367 |
| OV | TCGA-04-1365-01A | TCGA-04-1365 | CDC42BPB|SYNJ2BP | CDC42BPB | SYNJ2BP | 14 | 14 | -1 | -1 | 6 | 2 | 2 | 1.7 | 103414058 | 70842488 | tier1 | In-frame | 3343 | NA | 0.37374 |
| SKCM | TCGA-FW-A5DX-01A | TCGA-FW-A5DX | CDC42BPB|RGS6 | CDC42BPB | RGS6 | 14 | 14 | -1 | 1 | 5 | 4 | 3 | 0.061 | 103449893 | 73029125 | tier1 | In-frame | 3341 | NA | 0.36978 |
| PAAD | TCGA-US-A776-01A | TCGA-US-A776 | MUC2|CLCN3 | MUC2 | CLCN3 | 11 | 4 | 1 | 1 | 2 | 199 | 149 | 0.59 | 1104419 | 170623929 | tier3 | NA | 10856 | NA | 0.37388 |
| LGG | TCGA-HT-A5RA-01A | TCGA-HT-A5RA | MTOR|CR1L | MTOR | CR1L | 1 | 1 | -1 | 1 | 18 | 19 | 14 | 1.9 | 11288725 | 207857217 | tier1 | Out-of-frame | 10833 | NA | 0.34054 |
| GBM | TCGA-32-5222-01A | TCGA-32-5222 | MTOR|CAMTA1 | MTOR | CAMTA1 | 1 | 1 | -1 | 1 | 30 | 89 | 76 | 0.58 | 11313896 | 6880241 | tier1 | In-frame | 10832 | NA | 0.35361 |
| UCEC | TCGA-EY-A210-01A | TCGA-EY-A210 | MTOR|GARNL3 | MTOR | GARNL3 | 1 | 9 | -1 | 1 | 14 | 9 | 9 | 0.34 | 11217209 | 130151183 | tier1 | Out-of-frame | 10834 | NA | 0.33499 |
| UCS | TCGA-NA-A4QX-01A | TCGA-NA-A4QX | MTOR|MAD2L2 | MTOR | MAD2L2 | 1 | 1 | -1 | -1 | 45 | 40 | 31 | 0.004 | 11227499 | 11740670 | tier1 | CDS-5UTR | 10835 | NA | 0.35104 |
| LGG | TCGA-E1-A7YL-01A | TCGA-E1-A7YL | RYR3|BUB1B | RYR3 | BUB1B | 15 | 15 | 1 | 1 | 6 | 8 | 6 | 0.17 | 33765739 | 40457254 | tier1 | Out-of-frame | 15221 | NA | 0 |
| BRCA | TCGA-BH-A5IZ-01A | TCGA-BH-A5IZ | RYR3|LARP4 | RYR3 | LARP4 | 15 | 12 | 1 | 1 | 10 | 9 | 8 | 3.6 | 34034645 | 50821545 | tier1 | In-frame | 15222 | NA | 0 |
| LUSC | TCGA-43-8116-01A | TCGA-43-8116 | RYR3|AVEN | RYR3 | AVEN | 15 | 15 | 1 | -1 | 8 | 4 | 4 | 0.073 | 34049797 | 34168196 | tier1 | Out-of-frame | 15220 | NA | 0 |
| SARC | TCGA-DX-A48R-01A | TCGA-DX-A48R | GRK5|SUMF1 | GRK5 | SUMF1 | 10 | 3 | 1 | -1 | 13 | 9 | 7 | 0.085 | 121191039 | 4110429 | tier1 | In-frame | 7465 | NA | 0.38233 |
| HNSC | TCGA-BA-4075-01A | TCGA-BA-4075 | GRK5|PDZD8 | GRK5 | PDZD8 | 10 | 10 | 1 | -1 | 5 | 1 | 1 | 0.05 | 121156284 | 119078485 | tier2 | Out-of-frame | 7464 | NA | 0.38226 |
| LGG | TCGA-DU-5871-01A | TCGA-DU-5871 | SFMBT2|TGM2 | SFMBT2 | TGM2 | 10 | 20 | -1 | -1 | 7 | 3 | 2 | 1.1 | 7409611 | 36790001 | tier1 | In-frame | 15746 | NA | 0 |
| LIHC | TCGA-DD-A73F-01A | TCGA-DD-A73F | CAPZA2|ABCB1 | CAPZA2 | ABCB1 | 7 | 7 | 1 | -1 | 6 | 5 | 5 | 0.009 | 116451156 | 87168661 | tier1 | NA | 2978 | NA | 0.35332 |
| BRCA | TCGA-AR-A1AN-01A | TCGA-AR-A1AN | CAPZA2|MET | CAPZA2 | MET | 7 | 7 | 1 | 1 | 24 | 7 | 7 | 0.16 | 116550365 | 116409699 | tier1 | In-frame | 2981 | NA | 0.3779 |
| KIRP | TCGA-G7-6793-01A | TCGA-G7-6793 | CAPZA2|MET | CAPZA2 | MET | 7 | 7 | 1 | 1 | 53 | 25 | 21 | 0.16 | 116528244 | 116395409 | tier1 | Out-of-frame | 2982 | NA | 0.3779 |
| LUAD | TCGA-78-7220-01A | TCGA-78-7220 | CAPZA2|MET | CAPZA2 | MET | 7 | 7 | 1 | 1 | 45 | 22 | 18 | 0.16 | 116528244 | 116414935 | tier1 | In-frame | 2980 | NA | 0.3779 |
| ESCA | TCGA-L5-A4OU-01A | TCGA-L5-A4OU | CAPZA2|STYXL1 | CAPZA2 | STYXL1 | 7 | 7 | 1 | -1 | 6 | 14 | 13 | 0.46 | 116528244 | 75658021 | tier1 | In-frame | 2983 | NA | 0.36131 |
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