Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| OV | TCGA-59-A5PD-01A | TCGA-59-A5PD | TLK1|ADK | TLK1 | ADK | 2 | 10 | -1 | 1 | 4 | 64 | 60 | 0.42 | 171939291 | 76429941 | tier1 | Out-of-frame | 17853 | NA | 0 |
| LUSC | TCGA-46-6025-01A | TCGA-46-6025 | TLK1|CREG2 | TLK1 | CREG2 | 2 | 2 | -1 | -1 | 42 | 21 | 21 | 0.19 | 171902684 | 101971828 | tier1 | In-frame | 17855 | NA | 0 |
| ESCA | TCGA-L5-A4OQ-01A | TCGA-L5-A4OQ | TLK1|KCNH7 | TLK1 | KCNH7 | 2 | 2 | -1 | -1 | 3 | 23 | 21 | 0.84 | 171974249 | 163393590 | tier1 | Out-of-frame | 17856 | NA | 0 |
| BRCA | TCGA-A8-A094-01A | TCGA-A8-A094 | TLK1|SSB | TLK1 | SSB | 2 | 2 | -1 | 1 | 18 | 19 | 18 | 0.5 | 171939291 | 170661984 | tier1 | In-frame | 17857 | non-validated | 0 |
| LUAD | TCGA-L9-A444-01A | TCGA-L9-A444 | BAZ1A|NKX2-1 | BAZ1A | NKX2-1 | 14 | 14 | -1 | -1 | 4 | 5 | 4 | 0.045 | 35331250 | 36988575 | tier2 | In-frame | 1931 | NA | 0.37703 |
| LUSC | TCGA-63-6202-01A | TCGA-63-6202 | BAZ1A|RNF115 | BAZ1A | RNF115 | 14 | 1 | -1 | 1 | 25 | 9 | 8 | 0.76 | 35343698 | 145646115 | tier1 | Out-of-frame | 1932 | NA | 0.37258 |
| BRCA | TCGA-A8-A07C-01A | TCGA-A8-A07C | RYR2|GPR137B | RYR2 | GPR137B | 1 | 1 | 1 | 1 | 3 | 2 | 2 | 0.099 | 237780786 | 236368426 | tier1 | In-frame | 15218 | NA | 0 |
| LGG | TCGA-DU-6542-01A | TCGA-DU-6542 | RYR2|WLS | RYR2 | WLS | 1 | 1 | 1 | -1 | 2 | 11 | 11 | 1.6 | 237205869 | 68659910 | tier2 | Out-of-frame | 15219 | NA | 0 |
| BRCA | TCGA-E2-A14Z-01A | TCGA-E2-A14Z | STK39|ITGB6 | STK39 | ITGB6 | 2 | 2 | -1 | -1 | 2 | 4 | 4 | 0.18 | 168921829 | 160994710 | tier2 | In-frame | 17087 | NA | 0 |
| MESO | TCGA-UT-A88D-01B | TCGA-UT-A88D | STK39|SCN7A | STK39 | SCN7A | 2 | 2 | -1 | -1 | 3 | 3 | 3 | 3.4 | 168869144 | 167334220 | tier1 | CDS-5UTR | 17092 | NA | 0 |
| BRCA | TCGA-AN-A0AJ-01A | TCGA-AN-A0AJ | STK39|MAT1A | STK39 | MAT1A | 2 | 10 | -1 | -1 | 7 | 3 | 3 | 0.46 | 168931492 | 82045345 | tier1 | Out-of-frame | 17088 | NA | 0 |
| LUAD | TCGA-55-6968-01A | TCGA-55-6968 | STK39|SCN3A | STK39 | SCN3A | 2 | 2 | -1 | -1 | 3 | 4 | 4 | 1.2 | 168986051 | 166012413 | tier1 | Out-of-frame | 17091 | NA | 0 |
| HNSC | TCGA-CN-A49A-01A | TCGA-CN-A49A | STK39|NCKAP5 | STK39 | NCKAP5 | 2 | 2 | -1 | -1 | 18 | 15 | 14 | 0.085 | 168869144 | 133489624 | tier1 | In-frame | 17089 | NA | 0 |
| HNSC | TCGA-QK-A6IG-01A | TCGA-QK-A6IG | STK39|PARVA | STK39 | PARVA | 2 | 11 | -1 | 1 | 2 | 3 | 3 | 0.014 | 169103738 | 12495292 | tier2 | In-frame | 17090 | NA | 0 |
| LGG | TCGA-TQ-A7RM-01A | TCGA-TQ-A7RM | STK39|C9orf5 | STK39 | C9orf5 | 2 | 9 | -1 | -1 | 6 | 4 | 4 | 0.31 | 168931492 | 111870850 | tier1 | In-frame | 17086 | NA | 0 |
| LGG | TCGA-HT-A616-01A | TCGA-HT-A616 | CALM1|KIF3A | CALM1 | KIF3A | 14 | 5 | 1 | -1 | 2 | 8 | 4 | 0.95 | 90874605 | 132035266 | tier4 | NA | 2907 | NA | 0.38409 |
| LGG | TCGA-HT-8104-01A | TCGA-HT-8104 | CALM1|UTRN | CALM1 | UTRN | 14 | 6 | 1 | 1 | 2 | 1 | 1 | 0.54 | 90874605 | 144665237 | tier2 | NA | 2908 | non-validated | 0.38634 |
| LIHC | TCGA-DD-AAE4-01A | TCGA-DD-AAE4 | F5|SCYL3 | F5 | SCYL3 | 1 | 1 | -1 | -1 | 6 | 3 | 3 | 0.87 | 169505744 | 169858031 | tier1 | CDS-5UTR | 5970 | NA | 0.37124 |
| BRCA | TCGA-A1-A0SO-01A | TCGA-A1-A0SO | CDC42BPB|KIAA1409 | CDC42BPB | KIAA1409 | 14 | 14 | -1 | 1 | 6 | 4 | 4 | 2.2 | 103523336 | 93934017 | tier2 | In-frame | 3340 | NA | 0.36435 |
| HNSC | TCGA-CN-4735-01A | TCGA-CN-4735 | CDC42BPB|SMEK1 | CDC42BPB | SMEK1 | 14 | 14 | -1 | -1 | 19 | 23 | 13 | 0.99 | 103470265 | 91927951 | tier1 | Out-of-frame | 3342 | NA | 0.3628 |
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