Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUAD | TCGA-86-8358-01A | TCGA-86-8358 | PSAP|PLEKHB2 | PSAP | PLEKHB2 | 10 | 2 | -1 | 1 | 2 | 16 | 12 | 0.44 | 73576056 | 131876464 | tier3 | 3UTR-5UTR | 13686 | NA | 0.35519 |
| SKCM | TCGA-EB-A5VU-01A | TCGA-EB-A5VU | PSAP|ARFGEF2 | PSAP | ARFGEF2 | 10 | 20 | -1 | 1 | 2 | 16 | 12 | 0.9 | 73576056 | 47615777 | tier2 | 3UTR-CDS | 13675 | NA | 0.36411 |
| SKCM | TCGA-D3-A1Q4-06A | TCGA-D3-A1Q4 | PSAP|IQCE | PSAP | IQCE | 10 | 7 | -1 | 1 | 2 | 16 | 16 | 0.057 | 73576056 | 2641075 | tier3 | 3UTR-CDS | 13683 | NA | 0.36211 |
| SKCM | TCGA-ER-A19G-06A | TCGA-ER-A19G | PSAP|QKI | PSAP | QKI | 10 | 6 | -1 | 1 | 2 | 1 | 1 | 3.4 | 73576058 | 163876363 | tier3 | NA | 13688 | NA | 0.36046 |
| SKCM | TCGA-EB-A5UL-06A | TCGA-EB-A5UL | PSAP|TCERG1 | PSAP | TCERG1 | 10 | 5 | -1 | 1 | 2 | 3 | 1 | 1.7 | 73576058 | 145888708 | tier4 | 3UTR-CDS | 13690 | NA | 0.36914 |
| UCS | TCGA-N7-A59B-01A | TCGA-N7-A59B | PSAP|OFD1 | PSAP | OFD1 | 10 | X | -1 | 1 | 2 | 42 | 4 | 1.3 | 73576307 | 13786837 | tier2 | NA | 13685 | NA | 0.35363 |
| UVM | TCGA-V4-A9EU-01A | TCGA-V4-A9EU | PSAP|DDX27 | PSAP | DDX27 | 10 | 20 | -1 | 1 | 2 | 31 | 9 | 0.077 | 73576058 | 47849303 | tier3 | NA | 13679 | NA | 0.36328 |
| STAD | TCGA-FP-8631-01A | TCGA-FP-8631 | SLC9A8|PTGIS | SLC9A8 | PTGIS | 20 | 20 | 1 | -1 | 2 | 5 | 5 | 0.003 | 48439678 | 48124601 | tier2 | Out-of-frame | 16303 | NA | 0 |
| BLCA | TCGA-4Z-AA7R-01A | TCGA-4Z-AA7R | SLC9A8|TOM1L2 | SLC9A8 | TOM1L2 | 20 | 17 | 1 | -1 | 3 | 2 | 2 | 0.16 | 48431726 | 17754266 | tier1 | Out-of-frame | 16305 | NA | 0 |
| BRCA | TCGA-BH-A0H9-01A | TCGA-BH-A0H9 | SLC9A8|CCDC64B | SLC9A8 | CCDC64B | 20 | 16 | 1 | -1 | 12 | 13 | 13 | 0.41 | 48431726 | 3081151 | tier2 | Out-of-frame | 16302 | NA | 0 |
| BRCA | TCGA-AR-A0TW-01A | TCGA-AR-A0TW | SLC9A8|RAE1 | SLC9A8 | RAE1 | 20 | 20 | 1 | 1 | 6 | 4 | 4 | 2.1 | 48491358 | 55949663 | tier1 | Out-of-frame | 16304 | NA | 0 |
| SARC | TCGA-DX-A1L0-01A | TCGA-DX-A1L0 | SLC9A8|B4GALT5 | SLC9A8 | B4GALT5 | 20 | 20 | 1 | -1 | 9 | 1 | 1 | 1.1 | 48431726 | 48273239 | tier3 | In-frame | 16301 | validated | 0 |
| PRAD | TCGA-VP-A87D-01A | TCGA-VP-A87D | OCLN|CDK14 | OCLN | CDK14 | 5 | 7 | 1 | 1 | 12 | 17 | 14 | 1.2 | 68809936 | 90836480 | tier1 | CDS-3UTR | 12001 | NA | 0.36608 |
| BLCA | TCGA-2F-A9KP-01A | TCGA-2F-A9KP | OCLN|CCNB1 | OCLN | CCNB1 | 5 | 5 | 1 | 1 | 16 | 21 | 19 | 0.5 | 68809936 | 68467097 | tier1 | In-frame | 12000 | NA | 0.37707 |
| LIHC | TCGA-CC-5263-01A | TCGA-CC-5263 | OCLN|GPR98 | OCLN | GPR98 | 5 | 5 | 1 | 1 | 470 | 29 | 29 | 1.3 | 68788486 | 90261232 | tier1 | 5UTR-CDS | 12002 | NA | 0.37172 |
| SKCM | TCGA-YG-AA3O-06A | TCGA-YG-AA3O | SPG7|KIAA0182 | SPG7 | KIAA0182 | 16 | 16 | 1 | 1 | 328 | 181 | 164 | 0.82 | 89599044 | 85682158 | tier1 | In-frame | 16724 | NA | 0 |
| UCEC | TCGA-EY-A54A-01A | TCGA-EY-A54A | SPG7|C3orf25 | SPG7 | C3orf25 | 16 | 3 | 1 | -1 | 6 | 3 | 3 | 0.82 | 89599044 | 129140646 | tier1 | In-frame | 16723 | NA | 0 |
| LUAD | TCGA-NJ-A4YF-01A | TCGA-NJ-A4YF | PLCG2|WWOX | PLCG2 | WWOX | 16 | 16 | 1 | 1 | 3 | 3 | 2 | 0.21 | 81904540 | 79245505 | tier1 | Out-of-frame | 12971 | NA | 0.38907 |
| STAD | TCGA-CD-A4MH-01A | TCGA-CD-A4MH | GRK6|DBN1 | GRK6 | DBN1 | 5 | 5 | 1 | -1 | 8 | 149 | 124 | 1.1 | 176862122 | 176886269 | tier1 | In-frame | 7466 | NA | 0.38387 |
| CHOL | TCGA-W5-AA34-01A | TCGA-W5-AA34 | LPAR1|EIF2C3 | LPAR1 | EIF2C3 | 9 | 1 | -1 | 1 | 4 | 1 | 1 | 1.6 | 113703701 | 36499775 | tier2 | In-frame | 9435 | NA | 0.36516 |
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