Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
| Showing page 305 |
first page | previous page | next page | last page |
| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SARC | TCGA-3B-A9HS-01A | TCGA-3B-A9HS | ENPP1|INSR | ENPP1 | INSR | 6 | 19 | 1 | -1 | 5 | 4 | 4 | 2.4 | 132129415 | 7152938 | tier1 | Out-of-frame | 5597 | NA | 0.38976 |
| BRCA | TCGA-OL-A6VO-01A | TCGA-OL-A6VO | ENPP1|RIPPLY2 | ENPP1 | RIPPLY2 | 6 | 6 | 1 | 1 | 2 | 2 | 1 | 2.1 | 132129415 | 84563816 | tier2 | In-frame | 5598 | NA | 0.35911 |
| LIHC | TCGA-RC-A6M5-01A | TCGA-RC-A6M5 | ENPP1|CDX1 | ENPP1 | CDX1 | 6 | 5 | 1 | 1 | 78 | 75 | 65 | 0.21 | 132181646 | 149562331 | tier1 | Out-of-frame | 5596 | NA | 0.36442 |
| KIRP | TCGA-Q2-A5QZ-01A | TCGA-Q2-A5QZ | DPP4|PDK1 | DPP4 | PDK1 | 2 | 2 | -1 | 1 | 56 | 52 | 51 | 1.4 | 162902042 | 173451006 | tier1 | In-frame | 5082 | NA | 0.37085 |
| LIHC | TCGA-DD-A3A5-01A | TCGA-DD-A3A5 | DPP4|THSD7B | DPP4 | THSD7B | 2 | 2 | -1 | 1 | 3 | 7 | 6 | 0.24 | 162929909 | 137813990 | tier1 | In-frame | 5083 | NA | 0.35843 |
| PRAD | TCGA-YL-A8SL-01B | TCGA-YL-A8SL | CR1L|C1orf116 | CR1L | C1orf116 | 1 | 1 | 1 | -1 | 3 | 4 | 3 | 1.2 | 207881608 | 207201024 | tier1 | CDS-5UTR | 4179 | NA | 0 |
| BRCA | TCGA-A8-A08I-01A | TCGA-A8-A08I | PSAP|TYK2 | PSAP | TYK2 | 10 | 19 | -1 | -1 | 2 | 31 | 1 | 0.44 | 73576058 | 10491352 | tier3 | 3UTR-5UTR | 13692 | NA | 0.3755 |
| KIRC | TCGA-CZ-5454-01A | TCGA-CZ-5454 | PSAP|TYK2 | PSAP | TYK2 | 10 | 19 | -1 | -1 | 2 | 34 | 1 | 0.44 | 73576058 | 10491352 | tier4 | 3UTR-5UTR | 13693 | non-validated | 0.3755 |
| UCEC | TCGA-AX-A3G6-01A | TCGA-AX-A3G6 | PSAP|PTN | PSAP | PTN | 10 | 7 | -1 | -1 | 2 | 78 | 59 | 0.16 | 73576056 | 136938384 | tier4 | 3UTR-CDS | 13687 | NA | 0.36332 |
| KIRC | TCGA-B8-5164-01A | TCGA-B8-5164 | PSAP|SIAE | PSAP | SIAE | 10 | 11 | -1 | -1 | 2 | 3 | 1 | 2 | 73576058 | 124543777 | tier3 | 3UTR-5UTR | 13689 | NA | 0.34798 |
| SKCM | TCGA-FR-A8YE-06A | TCGA-FR-A8YE | PSAP|C7 | PSAP | C7 | 10 | 5 | -1 | 1 | 2 | 55 | 10 | 1.5 | 73576058 | 40954982 | tier3 | NA | 13678 | NA | 0.35921 |
| SKCM | TCGA-D3-A3CC-06A | TCGA-D3-A3CC | PSAP|C3 | PSAP | C3 | 10 | 19 | -1 | -1 | 2 | 1 | 1 | 0.043 | 73576058 | 6720693 | tier3 | 3UTR-5UTR | 13677 | NA | 0.36665 |
| SKCM | TCGA-EB-A44Q-06A | TCGA-EB-A44Q | PSAP|ABCA1 | PSAP | ABCA1 | 10 | 9 | -1 | -1 | 2 | 1 | 1 | 3.7 | 73576058 | 107567001 | tier4 | 3UTR-CDS | 13673 | NA | 0.37929 |
| BRCA | TCGA-A7-A5ZV-01A | TCGA-A7-A5ZV | PSAP|C1S | PSAP | C1S | 10 | 12 | -1 | 1 | 2 | 85 | 1 | 1.1 | 73576058 | 7096351 | tier4 | 3UTR-5UTR | 13676 | NA | 0.36754 |
| BRCA | TCGA-A7-A3J0-01A | TCGA-A7-A3J0 | PSAP|AC011333.1 | PSAP | AC011333.1 | 10 | 5 | -1 | 1 | 2 | 16 | 1 | 3 | 73576058 | 173473096 | tier3 | NA | 13674 | NA | 0.34669 |
| COAD | TCGA-CK-4948-01B | TCGA-CK-4948 | PSAP|TSPAN8 | PSAP | TSPAN8 | 10 | 12 | -1 | -1 | 2 | 21 | 1 | 1.9 | 73576056 | 71835367 | tier3 | 3UTR-5UTR | 13691 | NA | 0.35261 |
| LUAD | TCGA-73-4666-01A | TCGA-73-4666 | PSAP|FADS2 | PSAP | FADS2 | 10 | 11 | -1 | 1 | 2 | 4 | 2 | 0.37 | 73576056 | 61588853 | tier3 | 3UTR-CDS | 13680 | non-validated | 0.35273 |
| LUAD | TCGA-75-7027-01A | TCGA-75-7027 | PSAP|FAR1 | PSAP | FAR1 | 10 | 11 | -1 | 1 | 2 | 25 | 17 | 7.2 | 73576307 | 13744912 | tier3 | NA | 13681 | NA | 0.3532 |
| LUAD | TCGA-55-7995-01A | TCGA-55-7995 | PSAP|FOXP1 | PSAP | FOXP1 | 10 | 3 | -1 | -1 | 2 | 10 | 6 | 2.5 | 73576307 | 71007472 | tier4 | NA | 13682 | NA | 0.36269 |
| LUAD | TCGA-67-3770-01A | TCGA-67-3770 | PSAP|KIF3A | PSAP | KIF3A | 10 | 5 | -1 | -1 | 2 | 19 | 7 | 0.64 | 73576058 | 132035266 | tier3 | NA | 13684 | NA | 0.36827 |
|
Showing page 305 |
first page | previous page | next page | last page |
Copyright © 2020 University of Pennsylvania. All Rights Reserved.