Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| PRAD | TCGA-CH-5751-01A | TCGA-CH-5751 | TRIM33|CSDE1 | TRIM33 | CSDE1 | 1 | 1 | -1 | -1 | 12 | 12 | 12 | 0.002 | 114945382 | 115282511 | tier1 | In-frame | 18633 | NA | 0 |
| READ | TCGA-AG-4021-01A | TCGA-AG-4021 | TRIM33|BCAR3 | TRIM33 | BCAR3 | 1 | 1 | -1 | -1 | 11 | 16 | 15 | 0.96 | 115053172 | 94171698 | tier1 | CDS-5UTR | 18630 | NA | 0 |
| BLCA | TCGA-CU-A3QU-01A | TCGA-CU-A3QU | HTT|GRK4 | HTT | GRK4 | 4 | 4 | 1 | 1 | 18 | 10 | 10 | 0.3 | 3132150 | 3015415 | tier1 | In-frame | 8035 | NA | 0.38813 |
| LUSC | TCGA-98-7454-01A | TCGA-98-7454 | HTT|GRK4 | HTT | GRK4 | 4 | 4 | 1 | 1 | 53 | 16 | 14 | 0.3 | 3101121 | 3021368 | tier1 | In-frame | 8034 | NA | 0.38813 |
| BRCA | TCGA-E9-A1R6-01A | TCGA-E9-A1R6 | HTT|ESYT2 | HTT | ESYT2 | 4 | 7 | 1 | -1 | 11 | 6 | 5 | 0.24 | 3201666 | 158566087 | tier1 | Out-of-frame | 8033 | NA | 0.37348 |
| PRAD | TCGA-V1-A9OL-01A | TCGA-V1-A9OL | HTT|WDR19 | HTT | WDR19 | 4 | 4 | 1 | 1 | 65 | 60 | 60 | 0.18 | 3190820 | 39257468 | tier1 | In-frame | 8036 | NA | 0.37889 |
| CESC | TCGA-C5-A8XH-01A | TCGA-C5-A8XH | HIST1H3D|HIST1H2BD | HIST1H3D | HIST1H2BD | 6 | 6 | -1 | 1 | 2 | 1 | 1 | 100 | 26199087 | 26171203 | tier2 | 5UTR-3UTR | 7791 | NA | 0.35575 |
| UCEC | TCGA-AJ-A3QS-01A | TCGA-AJ-A3QS | IPP|SLC22A7 | IPP | SLC22A7 | 1 | 6 | -1 | 1 | 5 | 1 | 1 | 0.99 | 46165742 | 43266358 | tier2 | NA | 8305 | NA | 0.35685 |
| UVM | TCGA-VD-A8KJ-01A | TCGA-VD-A8KJ | MAP3K5|PREP | MAP3K5 | PREP | 6 | 6 | -1 | -1 | 2 | 1 | 1 | 1.9 | 136960681 | 105781380 | tier2 | Out-of-frame | 9880 | NA | 0.3862 |
| BLCA | TCGA-DK-A3IK-01A | TCGA-DK-A3IK | MAP3K5|PERP | MAP3K5 | PERP | 6 | 6 | -1 | -1 | 7 | 11 | 8 | 0.37 | 137112848 | 138417631 | tier1 | In-frame | 9879 | NA | 0.3859 |
| HNSC | TCGA-CN-4736-01A | TCGA-CN-4736 | MAP3K5|ARFIP1 | MAP3K5 | ARFIP1 | 6 | 4 | -1 | 1 | 13 | 9 | 9 | 0.18 | 137112848 | 153793604 | tier1 | In-frame | 9874 | NA | 0.38819 |
| LUSC | TCGA-66-2759-01A | TCGA-66-2759 | MAP3K5|NKAIN2 | MAP3K5 | NKAIN2 | 6 | 6 | -1 | 1 | 14 | 7 | 7 | 0.17 | 137041588 | 125112485 | tier1 | In-frame | 9877 | non-validated | 0.38563 |
| PCPG | TCGA-RW-A686-01A | TCGA-RW-A686 | MAP3K5|NDUFB9 | MAP3K5 | NDUFB9 | 6 | 8 | -1 | 1 | 2 | 3 | 3 | 0.24 | 137112848 | 125579888 | tier2 | Out-of-frame | 9876 | NA | 0.3872 |
| PRAD | TCGA-VP-A875-01A | TCGA-VP-A875 | MAP3K5|CLVS2 | MAP3K5 | CLVS2 | 6 | 6 | -1 | 1 | 7 | 5 | 5 | 0.046 | 136972122 | 123369767 | tier1 | In-frame | 9875 | NA | 0.38429 |
| UVM | TCGA-VD-A8KJ-01A | TCGA-VD-A8KJ | MAP3K5|OSTM1 | MAP3K5 | OSTM1 | 6 | 6 | -1 | -1 | 10 | 9 | 9 | 0.002 | 137112848 | 108385503 | tier1 | Out-of-frame | 9878 | NA | 0.38539 |
| BRCA | TCGA-A2-A0YE-01A | TCGA-A2-A0YE | PDGFA|NT5C3 | PDGFA | NT5C3 | 7 | 7 | -1 | -1 | 95 | 124 | 113 | 100 | 550446 | 33063720 | tier1 | In-frame | 12524 | NA | 0.35712 |
| SARC | TCGA-DX-A8BG-01A | TCGA-DX-A8BG | PDGFA|GET4 | PDGFA | GET4 | 7 | 7 | -1 | 1 | 17 | 12 | 2 | 0.36 | 558576 | 925693 | tier1 | Out-of-frame | 12523 | NA | 0.35555 |
| SKCM | TCGA-ER-A197-06A | TCGA-ER-A197 | PDGFA|OCA2 | PDGFA | OCA2 | 7 | 15 | -1 | -1 | 18 | 18 | 18 | 0.006 | 557031 | 28277309 | tier1 | Out-of-frame | 12525 | NA | 0.36201 |
| LUSC | TCGA-85-8664-01A | TCGA-85-8664 | SLC2A10|ACSS2 | SLC2A10 | ACSS2 | 20 | 20 | 1 | 1 | 11 | 7 | 7 | 0.48 | 45338379 | 33500899 | tier1 | Out-of-frame | 16127 | NA | 0 |
| LUSC | TCGA-85-8048-01A | TCGA-85-8048 | GZMM|HNRNPM | GZMM | HNRNPM | 19 | 19 | 1 | 1 | 10 | 7 | 6 | 0.3 | 547436 | 8553575 | tier1 | Out-of-frame | 7571 | NA | 0.37784 |
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