Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LIHC | TCGA-2V-A95S-01A | TCGA-2V-A95S | SERPINA1|CD63 | SERPINA1 | CD63 | 14 | 12 | -1 | -1 | 2 | 1 | 1 | 0.15 | 94844713 | 56123444 | tier3 | NA | 15652 | NA | 0 |
| LIHC | TCGA-RC-A6M6-01A | TCGA-RC-A6M6 | SERPINA1|CD63 | SERPINA1 | CD63 | 14 | 12 | -1 | -1 | 10 | 1 | 1 | 0.15 | 94844713 | 56123444 | tier4 | NA | 15653 | NA | 0 |
| LIHC | TCGA-ED-A66Y-01A | TCGA-ED-A66Y | SERPINA1|LGR4 | SERPINA1 | LGR4 | 14 | 11 | -1 | -1 | 2 | 1 | 1 | 0.66 | 94844726 | 27494322 | tier3 | 3UTR-5UTR | 15659 | NA | 0 |
| LIHC | TCGA-DD-A4NR-01A | TCGA-DD-A4NR | SERPINA1|CCT5 | SERPINA1 | CCT5 | 14 | 5 | -1 | 1 | 2 | 30 | 24 | 0.13 | 94843084 | 10250033 | tier3 | 3UTR-5UTR | 15648 | NA | 0 |
| LIHC | TCGA-EP-A3JL-01A | TCGA-EP-A3JL | SERPINA1|CCT5 | SERPINA1 | CCT5 | 14 | 5 | -1 | 1 | 2 | 23 | 19 | 0.13 | 94843084 | 10250033 | tier3 | 3UTR-5UTR | 15649 | NA | 0 |
| LIHC | TCGA-CC-A3MC-01A | TCGA-CC-A3MC | SERPINA1|FADS2 | SERPINA1 | FADS2 | 14 | 11 | -1 | 1 | 2 | 1 | 1 | 0.037 | 94843084 | 61588853 | tier3 | 3UTR-CDS | 15656 | NA | 0 |
| LIHC | TCGA-DD-AACK-01A | TCGA-DD-AACK | SERPINA1|FADS2 | SERPINA1 | FADS2 | 14 | 11 | -1 | 1 | 4 | 1 | 1 | 0.037 | 94844686 | 61588853 | tier3 | 3UTR-CDS | 15657 | NA | 0 |
| LIHC | TCGA-BC-A10U-01A | TCGA-BC-A10U | SERPINA1|FOXP1 | SERPINA1 | FOXP1 | 14 | 3 | -1 | -1 | 2 | 7 | 5 | 0.9 | 94844686 | 71007472 | tier3 | NA | 15658 | NA | 0 |
| LIHC | TCGA-DD-A4NO-01A | TCGA-DD-A4NO | SERPINA1|METTL7A | SERPINA1 | METTL7A | 14 | 12 | -1 | 1 | 2 | 1 | 1 | 0.15 | 94844726 | 51318534 | tier3 | 3UTR-5UTR | 15660 | NA | 0 |
| LIHC | TCGA-CC-5261-01A | TCGA-CC-5261 | SERPINA1|PEX1 | SERPINA1 | PEX1 | 14 | 7 | -1 | -1 | 2 | 3 | 3 | 0.013 | 94843084 | 92146729 | tier4 | 3UTR-5UTR | 15661 | non-validated | 0 |
| LIHC | TCGA-DD-AACK-01A | TCGA-DD-AACK | SERPINA1|RPL35 | SERPINA1 | RPL35 | 14 | 9 | -1 | -1 | 2 | 1 | 1 | 0.21 | 94844786 | 127624240 | tier3 | CDS-5UTR | 15662 | NA | 0 |
| LIHC | TCGA-DD-A4NR-01A | TCGA-DD-A4NR | SERPINA1|TMCO1 | SERPINA1 | TMCO1 | 14 | 1 | -1 | -1 | 2 | 5 | 4 | 3.4 | 94844713 | 165728821 | tier3 | 3UTR-CDS | 15663 | NA | 0 |
| LUAD | TCGA-50-6673-01A | TCGA-50-6673 | SERPINA1|ANKS1A | SERPINA1 | ANKS1A | 14 | 6 | -1 | 1 | 2 | 7 | 6 | 0.065 | 94844686 | 34977682 | tier3 | NA | 15647 | NA | 0 |
| PRAD | TCGA-KC-A4BR-01A | TCGA-KC-A4BR | GUCA2A|ERG | GUCA2A | ERG | 1 | 21 | -1 | -1 | 47 | 60 | 57 | 0.35 | 42629074 | 39817544 | tier1 | Out-of-frame | 7557 | NA | 0.37071 |
| STAD | TCGA-CG-4449-01A | TCGA-CG-4449 | BLM|ABHD2 | BLM | ABHD2 | 15 | 15 | 1 | 1 | 7 | 59 | 53 | 1.4 | 91260671 | 89694908 | tier1 | 5UTR-CDS | 2119 | NA | 0.36718 |
| LUAD | TCGA-55-6543-01A | TCGA-55-6543 | TRIM33|RET | TRIM33 | RET | 1 | 10 | -1 | 1 | 21 | 21 | 20 | 1.7 | 114964058 | 43612032 | tier1 | In-frame | 18635 | NA | 0 |
| BRCA | TCGA-AN-A0FV-01A | TCGA-AN-A0FV | TRIM33|COL24A1 | TRIM33 | COL24A1 | 1 | 1 | -1 | -1 | 3 | 3 | 3 | 0.58 | 115005726 | 86334309 | tier1 | Out-of-frame | 18631 | NA | 0 |
| LUSC | TCGA-52-7809-01A | TCGA-52-7809 | TRIM33|CSMD2 | TRIM33 | CSMD2 | 1 | 1 | -1 | -1 | 14 | 4 | 3 | 1.2 | 114948032 | 34128692 | tier1 | In-frame | 18634 | NA | 0 |
| PCPG | TCGA-QR-A70X-01A | TCGA-QR-A70X | TRIM33|SHC1 | TRIM33 | SHC1 | 1 | 1 | -1 | -1 | 5 | 6 | 6 | 0.3 | 114963002 | 154942675 | tier1 | CDS-5UTR | 18636 | NA | 0 |
| PRAD | TCGA-CH-5750-01A | TCGA-CH-5750 | TRIM33|CSDE1 | TRIM33 | CSDE1 | 1 | 1 | -1 | -1 | 5 | 9 | 9 | 0.002 | 114945382 | 115282511 | tier1 | In-frame | 18632 | non-validated | 0 |
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