Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUAD | TCGA-NJ-A4YF-01A | TCGA-NJ-A4YF | IGF2R|WTAP | IGF2R | WTAP | 6 | 6 | 1 | 1 | 8 | 2 | 2 | 0.34 | 160495007 | 160163120 | tier1 | Out-of-frame | 8115 | NA | 0.3664 |
| LUSC | TCGA-66-2800-01A | TCGA-66-2800 | IGF2R|SYTL3 | IGF2R | SYTL3 | 6 | 6 | 1 | 1 | 3 | 7 | 6 | 2.6 | 160390427 | 159129354 | tier1 | In-frame | 8114 | NA | 0.36651 |
| SKCM | TCGA-EE-A29G-06A | TCGA-EE-A29G | IGF2R|QKI | IGF2R | QKI | 6 | 6 | 1 | 1 | 9 | 2 | 1 | 3.1 | 160511135 | 163956014 | tier2 | Out-of-frame | 8113 | NA | 0.3659 |
| THCA | TCGA-DJ-A3UM-01A | TCGA-DJ-A3UM | IGF2R|ARFGEF2 | IGF2R | ARFGEF2 | 6 | 20 | 1 | 1 | 2 | 2 | 2 | 0.82 | 160527583 | 47615777 | tier3 | 3UTR-CDS | 8111 | NA | 0.36908 |
| SKCM | TCGA-EB-A82C-01A | TCGA-EB-A82C | SLC6A17|DPYD | SLC6A17 | DPYD | 1 | 1 | 1 | -1 | 2 | 1 | 1 | 1 | 110719361 | 97564188 | tier2 | In-frame | 16282 | NA | 0 |
| BRCA | TCGA-E2-A105-01A | TCGA-E2-A105 | ZGPAT|C20orf152 | ZGPAT | C20orf152 | 20 | 20 | 1 | 1 | 32 | 28 | 26 | 0.47 | 62340516 | 34575317 | tier1 | In-frame | 20304 | NA | 0 |
| BRCA | TCGA-AN-A0FX-01A | TCGA-AN-A0FX | ADAM32|ZNF251 | ADAM32 | ZNF251 | 8 | 8 | 1 | -1 | 2 | 6 | 6 | 0.9 | 39009067 | 145948767 | tier2 | Out-of-frame | 417 | NA | 0.35399 |
| BRCA | TCGA-AC-A3TN-01A | TCGA-AC-A3TN | ABCB8|NOS3 | ABCB8 | NOS3 | 7 | 7 | 1 | 1 | 26 | 7 | 7 | 0.06 | 150725697 | 150706018 | tier1 | Out-of-frame | 50 | NA | 0.3738 |
| LUAD | TCGA-MP-A4TA-01A | TCGA-MP-A4TA | ABCB8|NOS3 | ABCB8 | NOS3 | 7 | 7 | 1 | 1 | 72 | 36 | 27 | 0.06 | 150725697 | 150706018 | tier1 | Out-of-frame | 51 | NA | 0.3738 |
| THCA | TCGA-DJ-A3UZ-01A | TCGA-DJ-A3UZ | SND1|BRAF | SND1 | BRAF | 7 | 7 | 1 | -1 | 6 | 4 | 3 | 3.7 | 127361454 | 140487384 | tier1 | In-frame | 16489 | NA | 0 |
| THCA | TCGA-EL-A3ZK-01A | TCGA-EL-A3ZK | SND1|BRAF | SND1 | BRAF | 7 | 7 | 1 | -1 | 21 | 4 | 3 | 3.7 | 127721553 | 140482957 | tier1 | In-frame | 16490 | NA | 0 |
| THCA | TCGA-FY-A40N-01A | TCGA-FY-A40N | SND1|BRAF | SND1 | BRAF | 7 | 7 | 1 | -1 | 15 | 9 | 9 | 3.7 | 127361454 | 140487384 | tier1 | In-frame | 16491 | NA | 0 |
| BRCA | TCGA-A1-A0SN-01A | TCGA-A1-A0SN | SND1|GRM8 | SND1 | GRM8 | 7 | 7 | 1 | -1 | 6 | 7 | 7 | 1.8 | 127361454 | 126544737 | tier1 | Out-of-frame | 16492 | NA | 0 |
| SARC | TCGA-FX-A3RE-01A | TCGA-FX-A3RE | SND1|IMMP2L | SND1 | IMMP2L | 7 | 7 | 1 | -1 | 204 | 84 | 74 | 100 | 127569382 | 110303777 | tier1 | Out-of-frame | 16493 | validated | 0 |
| KIRP | TCGA-5P-A9JZ-01A | TCGA-5P-A9JZ | SND1|AKAP9 | SND1 | AKAP9 | 7 | 7 | 1 | 1 | 8 | 13 | 10 | 0.036 | 127447627 | 91734992 | tier1 | Out-of-frame | 16488 | NA | 0 |
| KIRP | TCGA-BQ-5891-01A | TCGA-BQ-5891 | SLC22A4|PDLIM4 | SLC22A4 | PDLIM4 | 5 | 5 | 1 | 1 | 47 | 47 | 40 | 0.18 | 131630702 | 131598302 | tier1 | In-frame | 16077 | NA | 0 |
| LIHC | TCGA-DD-A3A4-01A | TCGA-DD-A3A4 | SERPINA1|CPD | SERPINA1 | CPD | 14 | 17 | -1 | 1 | 4 | 4 | 2 | 4 | 94844713 | 28783274 | tier1 | 3UTR-CDS | 15654 | NA | 0 |
| LIHC | TCGA-ED-A459-01A | TCGA-ED-A459 | SERPINA1|CPD | SERPINA1 | CPD | 14 | 17 | -1 | 1 | 2 | 13 | 5 | 4 | 94844713 | 28783274 | tier4 | 3UTR-CDS | 15655 | non-validated | 0 |
| LIHC | TCGA-DD-A4NB-01A | TCGA-DD-A4NB | SERPINA1|CD46 | SERPINA1 | CD46 | 14 | 1 | -1 | 1 | 2 | 9 | 1 | 0.12 | 94844713 | 207940358 | tier4 | 3UTR-CDS | 15650 | non-validated | 0 |
| LIHC | TCGA-DD-A4NN-01A | TCGA-DD-A4NN | SERPINA1|CD46 | SERPINA1 | CD46 | 14 | 1 | -1 | 1 | 2 | 3 | 3 | 0.12 | 94844713 | 207940358 | tier3 | 3UTR-CDS | 15651 | NA | 0 |
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