Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| UCEC | TCGA-E6-A8L9-01A | TCGA-E6-A8L9 | WNK3|FGD1 | WNK3 | FGD1 | X | X | -1 | -1 | 2 | 3 | 2 | 6 | 54359570 | 54497920 | tier2 | Out-of-frame | 19898 | NA | 0 |
| BLCA | TCGA-E7-A7DV-01A | TCGA-E7-A7DV | HRH1|TSEN2 | HRH1 | TSEN2 | 3 | 3 | 1 | 1 | 3 | 2 | 2 | 0.45 | 11196240 | 12531283 | tier1 | 5UTR-5UTR | 7959 | NA | 0.35917 |
| LIHC | TCGA-CC-A1HT-01A | TCGA-CC-A1HT | SLC30A10|MEX3A | SLC30A10 | MEX3A | 1 | 1 | -1 | -1 | 2 | 2 | 2 | 0.11 | 220100370 | 156047473 | tier2 | In-frame | 16141 | non-validated | 0 |
| READ | TCGA-CI-6621-01A | TCGA-CI-6621 | VKORC1L1|ACHE | VKORC1L1 | ACHE | 7 | 7 | 1 | -1 | 12 | 25 | 24 | 0.62 | 65338552 | 100488959 | tier1 | In-frame | 19584 | NA | 0 |
| BRCA | TCGA-B6-A0I8-01A | TCGA-B6-A0I8 | DAPK1|GRIN2D | DAPK1 | GRIN2D | 9 | 19 | 1 | 1 | 13 | 1 | 1 | 0.09 | 90296541 | 48922842 | tier4 | In-frame | 4551 | NA | 0.38712 |
| LUAD | TCGA-86-8075-01A | TCGA-86-8075 | DAPK1|AGTPBP1 | DAPK1 | AGTPBP1 | 9 | 9 | 1 | -1 | 7 | 10 | 9 | 0.94 | 90114054 | 88236200 | tier2 | In-frame | 4550 | NA | 0.38413 |
| ESCA | TCGA-L5-A4OS-01A | TCGA-L5-A4OS | COL27A1|ZNF618 | COL27A1 | ZNF618 | 9 | 9 | 1 | 1 | 3 | 10 | 10 | 0.005 | 116999995 | 116750601 | tier1 | Out-of-frame | 4011 | NA | 0.35247 |
| LIHC | TCGA-FV-A495-01A | TCGA-FV-A495 | COL27A1|CUL9 | COL27A1 | CUL9 | 9 | 6 | 1 | 1 | 3 | 1 | 1 | 0.18 | 116984547 | 43190517 | tier2 | In-frame | 4010 | validated | 0.34067 |
| UCS | TCGA-NA-A4QV-01A | TCGA-NA-A4QV | COL27A1|C9orf43 | COL27A1 | C9orf43 | 9 | 9 | 1 | 1 | 7 | 8 | 6 | 0.17 | 117053197 | 116181388 | tier1 | Out-of-frame | 4009 | NA | 0 |
| PRAD | TCGA-CH-5761-01A | TCGA-CH-5761 | CD47|ZFR | CD47 | ZFR | 3 | 5 | -1 | -1 | 2 | 10 | 6 | 0.24 | 107762146 | 32395410 | tier4 | 3UTR-CDS | 3275 | NA | 0.36831 |
| LGG | TCGA-DH-A66G-01A | TCGA-DH-A66G | SCN8A|ATF1 | SCN8A | ATF1 | 12 | 12 | 1 | 1 | 4 | 7 | 6 | 1.9 | 52184286 | 51189692 | tier1 | In-frame | 15428 | NA | 0 |
| BLCA | TCGA-4Z-AA7W-01A | TCGA-4Z-AA7W | SCN8A|KCNC2 | SCN8A | KCNC2 | 12 | 12 | 1 | -1 | 5 | 2 | 2 | 0.01 | 52093575 | 75445097 | tier1 | Out-of-frame | 15429 | NA | 0 |
| SARC | TCGA-3B-A9HL-01A | TCGA-3B-A9HL | SCN8A|ANO2 | SCN8A | ANO2 | 12 | 12 | 1 | -1 | 46 | 44 | 42 | 0.96 | 52056877 | 5756967 | tier1 | In-frame | 15427 | NA | 0 |
| SARC | TCGA-DX-AB2G-01A | TCGA-DX-AB2G | SCN8A|PPFIA2 | SCN8A | PPFIA2 | 12 | 12 | 1 | -1 | 4 | 3 | 2 | 0.11 | 52145377 | 81851645 | tier1 | In-frame | 15430 | NA | 0 |
| STAD | TCGA-BR-A44T-01A | TCGA-BR-A44T | FLNA|EIF2AK2 | FLNA | EIF2AK2 | X | 2 | -1 | -1 | 2 | 3 | 1 | 0.25 | 153576900 | 37342384 | tier3 | NA | 6561 | NA | 0.38918 |
| BRCA | TCGA-D8-A1Y0-01A | TCGA-D8-A1Y0 | FLNA|TKTL1 | FLNA | TKTL1 | X | X | -1 | 1 | 47 | 109 | 98 | 2.9 | 153602874 | 153533656 | tier1 | 5UTR-CDS | 6563 | NA | 0.37738 |
| KIRP | TCGA-G7-6793-01A | TCGA-G7-6793 | FLNA|ATP5G3 | FLNA | ATP5G3 | X | 2 | -1 | -1 | 2 | 1 | 1 | 0.48 | 153576900 | 176049335 | tier3 | 3UTR-5UTR | 6560 | NA | 0.37811 |
| LUSC | TCGA-NC-A5HH-01A | TCGA-NC-A5HH | FLNA|MTCP1NB | FLNA | MTCP1NB | X | X | -1 | -1 | 12 | 4 | 4 | 1.2 | 153602874 | 154292308 | tier1 | 5UTR-5UTR | 6562 | NA | 0.37536 |
| BRCA | TCGA-E9-A248-01A | TCGA-E9-A248 | IGF2R|PREP | IGF2R | PREP | 6 | 6 | 1 | -1 | 9 | 3 | 3 | 0.94 | 160461756 | 105845802 | tier1 | Out-of-frame | 8112 | NA | 0.36081 |
| BRCA | TCGA-BH-A0BL-01A | TCGA-BH-A0BL | IGF2R|ACVR2A | IGF2R | ACVR2A | 6 | 2 | 1 | 1 | 3 | 16 | 16 | 1.9 | 160390427 | 148672760 | tier1 | Out-of-frame | 8110 | NA | 0.38092 |
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