Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
| Showing page 300 |
first page | previous page | next page | last page |
| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LGG | TCGA-HT-7854-01A | TCGA-HT-7854 | NCOR2|GATA4 | NCOR2 | GATA4 | 12 | 8 | -1 | 1 | 666 | 426 | 396 | 0.3 | 124862783 | 11606428 | tier1 | In-frame | 11245 | NA | 0.38265 |
| LGG | TCGA-DU-8167-01A | TCGA-DU-8167 | NCOR2|TMEM132D | NCOR2 | TMEM132D | 12 | 12 | -1 | -1 | 3 | 5 | 5 | 0.51 | 124885047 | 130015750 | tier1 | Out-of-frame | 11264 | NA | 0.3747 |
| OV | TCGA-13-A5FT-01A | TCGA-13-A5FT | NCOR2|DHX37 | NCOR2 | DHX37 | 12 | 12 | -1 | -1 | 3 | 9 | 8 | 0.033 | 124970987 | 125470811 | tier1 | Out-of-frame | 11242 | NA | 0.37961 |
| SARC | TCGA-DX-A3LS-01A | TCGA-DX-A3LS | NCOR2|NUP37 | NCOR2 | NUP37 | 12 | 12 | -1 | -1 | 11 | 6 | 4 | 0.4 | 124904503 | 102512361 | tier1 | CDS-5UTR | 11248 | non-validated | 0.37823 |
| SKCM | TCGA-D3-A2J8-06A | TCGA-D3-A2J8 | NCOR2|S100A4 | NCOR2 | S100A4 | 12 | 1 | -1 | -1 | 2 | 2 | 1 | 0.18 | 124831139 | 153518278 | tier4 | NA | 11251 | NA | 0.37429 |
| STAD | TCGA-CG-4449-01A | TCGA-CG-4449 | NCOR2|DHX37 | NCOR2 | DHX37 | 12 | 12 | -1 | -1 | 4 | 8 | 7 | 0.033 | 124846672 | 125435350 | tier1 | Out-of-frame | 11243 | NA | 0.37961 |
| LUAD | TCGA-44-3917-01A | TCGA-44-3917 | SLC6A9|EIF2B3 | SLC6A9 | EIF2B3 | 1 | 1 | -1 | -1 | 3 | 3 | 3 | 0.64 | 44496978 | 45363116 | tier1 | 5UTR-CDS | 16284 | validated | 0 |
| SARC | TCGA-DX-AB2P-01A | TCGA-DX-AB2P | SULF2|WFDC3 | SULF2 | WFDC3 | 20 | 20 | -1 | -1 | 37 | 15 | 12 | 0.17 | 46365447 | 44404241 | tier4 | In-frame | 17180 | NA | 0 |
| BRCA | TCGA-BH-A0HL-01A | TCGA-BH-A0HL | SULF2|GAB2 | SULF2 | GAB2 | 20 | 11 | -1 | -1 | 54 | 32 | 30 | 1.1 | 46385933 | 77991947 | tier1 | Out-of-frame | 17177 | NA | 0 |
| LIHC | TCGA-CC-A8HS-01A | TCGA-CC-A8HS | SULF2|BCAS1 | SULF2 | BCAS1 | 20 | 20 | -1 | -1 | 3 | 5 | 4 | 1.1 | 46305238 | 52645511 | tier1 | Out-of-frame | 17175 | NA | 0 |
| SARC | TCGA-DX-A8BR-01A | TCGA-DX-A8BR | SULF2|PEX5L | SULF2 | PEX5L | 20 | 3 | -1 | -1 | 5 | 1 | 1 | 1.6 | 46385933 | 179689453 | tier3 | Out-of-frame | 17178 | NA | 0 |
| SARC | TCGA-K1-A6RU-01A | TCGA-K1-A6RU | SULF2|TSHZ2 | SULF2 | TSHZ2 | 20 | 20 | -1 | 1 | 11 | 2 | 2 | 0.39 | 46365447 | 52103683 | tier1 | CDS-3UTR | 17179 | NA | 0 |
| STAD | TCGA-RD-A8MW-01A | TCGA-RD-A8MW | SULF2|DEXI | SULF2 | DEXI | 20 | 16 | -1 | -1 | 7 | 128 | 110 | 0.078 | 46414087 | 11023416 | tier1 | NA | 17176 | NA | 0 |
| SARC | TCGA-HB-A3YV-01A | TCGA-HB-A3YV | LAMA2|SLC11A2 | LAMA2 | SLC11A2 | 6 | 12 | 1 | -1 | 4 | 5 | 5 | 0.034 | 129513998 | 51404549 | tier1 | Out-of-frame | 9183 | NA | 0.36522 |
| SARC | TCGA-HB-A3YV-01A | TCGA-HB-A3YV | LAMA2|GRIK2 | LAMA2 | GRIK2 | 6 | 6 | 1 | 1 | 27 | 14 | 13 | 1.7 | 129513998 | 102124498 | tier1 | Out-of-frame | 9181 | NA | 0.3705 |
| KICH | TCGA-KN-8428-01A | TCGA-KN-8428 | LAMA2|C6orf58 | LAMA2 | C6orf58 | 6 | 6 | 1 | 1 | 32 | 28 | 26 | 0.12 | 129204502 | 127899831 | tier1 | In-frame | 9180 | non-validated | 0 |
| SARC | TCGA-3B-A9HS-01A | TCGA-3B-A9HS | LAMA2|NUP107 | LAMA2 | NUP107 | 6 | 12 | 1 | 1 | 17 | 16 | 16 | 0.36 | 129641800 | 69135593 | tier1 | In-frame | 9182 | NA | 0.36574 |
| SARC | TCGA-DX-A3M1-01A | TCGA-DX-A3M1 | LAMA2|UQCRB | LAMA2 | UQCRB | 6 | 8 | 1 | -1 | 28 | 26 | 24 | 0.16 | 129691135 | 97245455 | tier1 | Out-of-frame | 9184 | validated | 0.36265 |
| BRCA | TCGA-BH-A203-01A | TCGA-BH-A203 | HDAC2|TRDN | HDAC2 | TRDN | 6 | 6 | -1 | -1 | 19 | 27 | 24 | 0.039 | 114292021 | 123545276 | tier1 | In-frame | 7618 | NA | 0.3699 |
| LUAD | TCGA-97-8174-01A | TCGA-97-8174 | SLC22A25|PACS1 | SLC22A25 | PACS1 | 11 | 11 | -1 | 1 | 30 | 64 | 61 | 0.58 | 62995933 | 65998019 | tier1 | Out-of-frame | 16075 | NA | 0 |
|
Showing page 300 |
first page | previous page | next page | last page |
Copyright © 2020 University of Pennsylvania. All Rights Reserved.