Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SKCM | TCGA-FS-A1ZD-06A | TCGA-FS-A1ZD | CD55|CENPL | CD55 | CENPL | 1 | 1 | 1 | -1 | 16 | 18 | 12 | 0.066 | 207510163 | 173780444 | tier1 | CDS-5UTR | 3278 | non-validated | 0.36593 |
| SKCM | TCGA-ER-A19T-01A | TCGA-ER-A19T | CD55|PLD5 | CD55 | PLD5 | 1 | 1 | 1 | -1 | 17 | 15 | 14 | 0.27 | 207512762 | 242383417 | tier1 | In-frame | 3280 | non-validated | 0.36791 |
| CESC | TCGA-EA-A50E-01A | TCGA-EA-A50E | LONP1|RAD51 | LONP1 | RAD51 | 19 | 15 | -1 | 1 | 55 | 46 | 37 | 0.25 | 5700800 | 41023253 | tier1 | Out-of-frame | 9427 | NA | 0.37334 |
| BRCA | TCGA-C8-A12L-01A | TCGA-C8-A12L | LONP1|MAP2K7 | LONP1 | MAP2K7 | 19 | 19 | -1 | 1 | 8 | 9 | 9 | 0.39 | 5719715 | 7974640 | tier1 | Out-of-frame | 9426 | validated | 0.3812 |
| SKCM | TCGA-D3-A3CC-06A | TCGA-D3-A3CC | LONP1|CARD8 | LONP1 | CARD8 | 19 | 19 | -1 | -1 | 37 | 13 | 12 | 0.17 | 5719715 | 48718641 | tier1 | In-frame | 9422 | NA | 0.35383 |
| BRCA | TCGA-AC-A2BK-01A | TCGA-AC-A2BK | LONP1|ZNF780B | LONP1 | ZNF780B | 19 | 19 | -1 | -1 | 49 | 77 | 70 | 0.28 | 5707071 | 40542533 | tier1 | CDS-5UTR | 9429 | non-validated | 0.34922 |
| ESCA | TCGA-VR-A8Q7-01A | TCGA-VR-A8Q7 | LONP1|FUT6 | LONP1 | FUT6 | 19 | 19 | -1 | -1 | 2 | 14 | 13 | 0.35 | 5714194 | 5835088 | tier2 | CDS-5UTR | 9425 | NA | 0.34156 |
| LUAD | TCGA-95-7944-01A | TCGA-95-7944 | LONP1|DDX27 | LONP1 | DDX27 | 19 | 20 | -1 | 1 | 2 | 3 | 3 | 0.29 | 5691846 | 47849303 | tier3 | NA | 9423 | NA | 0.36037 |
| STAD | TCGA-BR-8289-01A | TCGA-BR-8289 | LONP1|DUS3L | LONP1 | DUS3L | 19 | 19 | -1 | -1 | 2 | 8 | 7 | 0.81 | 5705783 | 5790346 | tier3 | In-frame | 9424 | NA | 0.35499 |
| UCEC | TCGA-AX-A2H4-01A | TCGA-AX-A2H4 | LONP1|RANBP3 | LONP1 | RANBP3 | 19 | 19 | -1 | -1 | 2 | 6 | 6 | 0.38 | 5696065 | 5957984 | tier3 | Out-of-frame | 9428 | NA | 0.36109 |
| BRCA | TCGA-A1-A0SN-01A | TCGA-A1-A0SN | TRRAP|PRKAR2B | TRRAP | PRKAR2B | 7 | 7 | 1 | 1 | 5 | 4 | 4 | 1.7 | 98515302 | 106762397 | tier4 | Out-of-frame | 18744 | NA | 0 |
| STAD | TCGA-BR-8484-01A | TCGA-BR-8484 | TRRAP|ANKIB1 | TRRAP | ANKIB1 | 7 | 7 | 1 | 1 | 15 | 35 | 33 | 0.23 | 98582667 | 91924203 | tier1 | CDS-5UTR | 18743 | NA | 0 |
| HNSC | TCGA-CN-5364-01A | TCGA-CN-5364 | PTPN1|P2RX4 | PTPN1 | P2RX4 | 20 | 12 | 1 | 1 | 34 | 33 | 29 | 0.021 | 49127127 | 121654937 | tier1 | Out-of-frame | 13805 | NA | 0.38067 |
| BRCA | TCGA-C8-A1HN-01A | TCGA-C8-A1HN | PTPN1|SLC9A8 | PTPN1 | SLC9A8 | 20 | 20 | 1 | 1 | 15 | 18 | 16 | 0.79 | 49127127 | 48481265 | tier1 | CDS-5UTR | 13808 | NA | 0.37802 |
| BRCA | TCGA-EW-A1PC-01B | TCGA-EW-A1PC | PTPN1|C3orf75 | PTPN1 | C3orf75 | 20 | 3 | 1 | -1 | 2 | 3 | 3 | 0.05 | 49191191 | 47552716 | tier3 | In-frame | 13804 | non-validated | 0 |
| BRCA | TCGA-E2-A15E-06A | TCGA-E2-A15E | PTPN1|PREX1 | PTPN1 | PREX1 | 20 | 20 | 1 | -1 | 5 | 9 | 9 | 0.02 | 49191191 | 47361684 | tier1 | In-frame | 13806 | non-validated | 0.38199 |
| STAD | TCGA-D7-A6EZ-01A | TCGA-D7-A6EZ | PTPN1|PRR11 | PTPN1 | PRR11 | 20 | 17 | 1 | 1 | 2 | 7 | 7 | 3.2 | 49185015 | 57247109 | tier2 | CDS-5UTR | 13807 | NA | 0.38087 |
| SKCM | TCGA-FS-A1ZJ-06A | TCGA-FS-A1ZJ | PIK3R4|KALRN | PIK3R4 | KALRN | 3 | 3 | -1 | 1 | 4 | 6 | 6 | 1.9 | 130463330 | 124113982 | tier1 | Out-of-frame | 12852 | NA | 0.37304 |
| STAD | TCGA-CG-4443-01A | TCGA-CG-4443 | PIK3R4|ASTE1 | PIK3R4 | ASTE1 | 3 | 3 | -1 | -1 | 5 | 8 | 8 | 1.7 | 130447307 | 130735183 | tier1 | In-frame | 12851 | validated | 0.36075 |
| BRCA | TCGA-C8-A12L-01A | TCGA-C8-A12L | ESRRG|ADCY10 | ESRRG | ADCY10 | 1 | 1 | -1 | -1 | 17 | 8 | 8 | 1 | 217038403 | 167794093 | tier1 | 5UTR-CDS | 5838 | non-validated | 0.36857 |
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