Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUSC | TCGA-39-5035-01A | TCGA-39-5035 | IL1RAP|TP63 | IL1RAP | TP63 | 3 | 3 | 1 | 1 | 193 | 59 | 52 | 0.069 | 190232008 | 189526061 | tier2 | 5UTR-CDS | 8173 | NA | 0.37543 |
| CHOL | TCGA-W5-AA39-01A | TCGA-W5-AA39 | IL1RAP|SIRPG | IL1RAP | SIRPG | 3 | 20 | 1 | -1 | 7 | 6 | 4 | 3.6 | 190347287 | 1630054 | tier1 | CDS-5UTR | 8171 | NA | 0.37081 |
| LUSC | TCGA-98-A53B-01A | TCGA-98-A53B | IL1RAP|COL6A5 | IL1RAP | COL6A5 | 3 | 3 | 1 | 1 | 15 | 9 | 9 | 0.13 | 190282142 | 130092454 | tier1 | CDS-5UTR | 8170 | NA | 0.36599 |
| LUSC | TCGA-22-5491-01A | TCGA-22-5491 | IL1RAP|TMEM207 | IL1RAP | TMEM207 | 3 | 3 | 1 | -1 | 6 | 3 | 2 | 3 | 190326970 | 190165616 | tier1 | In-frame | 8172 | NA | 0.36856 |
| LUSC | TCGA-90-6837-01A | TCGA-90-6837 | IL1RAP|TPRG1 | IL1RAP | TPRG1 | 3 | 3 | 1 | 1 | 4 | 1 | 1 | 0.93 | 190232008 | 188844846 | tier3 | 5UTR-5UTR | 8174 | NA | 0.36971 |
| STAD | TCGA-VQ-A92D-01A | TCGA-VQ-A92D | IL1RAP|TPRG1 | IL1RAP | TPRG1 | 3 | 3 | 1 | 1 | 6 | 90 | 79 | 0.93 | 190347287 | 189028175 | tier1 | Out-of-frame | 8175 | NA | 0.36971 |
| BRCA | TCGA-E2-A15F-01A | TCGA-E2-A15F | PTPRT|NCOA3 | PTPRT | NCOA3 | 20 | 20 | -1 | 1 | 86 | 100 | 87 | 0.002 | 40944363 | 46211927 | tier1 | CDS-5UTR | 13921 | NA | 0 |
| LUAD | TCGA-55-8206-01A | TCGA-55-8206 | PTPRT|EXD2 | PTPRT | EXD2 | 20 | 14 | -1 | 1 | 2 | 2 | 2 | 0.01 | 41385102 | 69695533 | tier2 | CDS-5UTR | 13920 | NA | 0 |
| PRAD | TCGA-HC-7821-01A | TCGA-HC-7821 | TDRD7|GNA14 | TDRD7 | GNA14 | 9 | 9 | 1 | -1 | 2 | 1 | 1 | 1.2 | 100194520 | 80144169 | tier2 | Out-of-frame | 17625 | NA | 0 |
| LGG | TCGA-E1-A7YW-01A | TCGA-E1-A7YW | MYT1|ST8SIA1 | MYT1 | ST8SIA1 | 20 | 12 | 1 | -1 | 3 | 5 | 5 | 0.42 | 62859324 | 22478393 | tier1 | CDS-3UTR | 11025 | NA | 0.35456 |
| LUSC | TCGA-77-8140-01A | TCGA-77-8140 | MYT1|TCEA2 | MYT1 | TCEA2 | 20 | 20 | 1 | 1 | 5 | 2 | 2 | 1.2 | 62783263 | 62697829 | tier1 | 5UTR-CDS | 11026 | NA | 0.36321 |
| SARC | TCGA-DX-A3LY-01B | TCGA-DX-A3LY | STK40|OSCP1 | STK40 | OSCP1 | 1 | 1 | -1 | -1 | 7 | 8 | 5 | 3.1 | 36851324 | 36904511 | tier1 | 5UTR-CDS | 17094 | non-validated | 0 |
| UCEC | TCGA-KP-A3VZ-01A | TCGA-KP-A3VZ | RYR1|ZNF383 | RYR1 | ZNF383 | 19 | 19 | 1 | 1 | 54 | 32 | 26 | 0.92 | 39068844 | 37733371 | tier1 | Out-of-frame | 15217 | NA | 0 |
| LUAD | TCGA-69-7761-01A | TCGA-69-7761 | XPNPEP3|C22orf28 | XPNPEP3 | C22orf28 | 22 | 22 | 1 | -1 | 17 | 7 | 4 | 2 | 41282519 | 32784086 | tier1 | In-frame | 19957 | NA | 0 |
| CESC | TCGA-HM-A6W2-06A | TCGA-HM-A6W2 | ATP2A1|ATXN2L | ATP2A1 | ATXN2L | 16 | 16 | 1 | 1 | 4 | 3 | 3 | 0.16 | 28912237 | 28846379 | tier1 | In-frame | 1703 | NA | 0.36709 |
| HNSC | TCGA-CV-6940-01A | TCGA-CV-6940 | ADH7|CXCR5 | ADH7 | CXCR5 | 4 | 11 | -1 | 1 | 2 | 3 | 2 | 0.033 | 100333418 | 118754475 | tier3 | 3UTR-5UTR | 500 | NA | 0.35618 |
| SKCM | TCGA-D9-A1JW-06A | TCGA-D9-A1JW | CD55|NEK2 | CD55 | NEK2 | 1 | 1 | 1 | -1 | 3 | 3 | 3 | 0.005 | 207512762 | 211836994 | tier1 | In-frame | 3279 | NA | 0.38094 |
| LUAD | TCGA-86-7953-01A | TCGA-86-7953 | CD55|C4BPA | CD55 | C4BPA | 1 | 1 | 1 | 1 | 20 | 45 | 41 | 0.063 | 207500182 | 207300058 | tier1 | In-frame | 3276 | NA | 0.36914 |
| PAAD | TCGA-IB-7654-01A | TCGA-IB-7654 | CD55|C4BPA | CD55 | C4BPA | 1 | 1 | 1 | 1 | 301 | 252 | 223 | 0.063 | 207512762 | 207317889 | tier1 | Out-of-frame | 3277 | NA | 0.36914 |
| SARC | TCGA-DX-A3LY-01B | TCGA-DX-A3LY | CD55|RGS21 | CD55 | RGS21 | 1 | 1 | 1 | 1 | 28 | 21 | 20 | 0.05 | 207512762 | 192335051 | tier1 | Out-of-frame | 3281 | non-validated | 0.36872 |
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