Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-BH-A1EU-01A | TCGA-BH-A1EU | DPYD|STAB2 | DPYD | STAB2 | 1 | 12 | -1 | 1 | 8 | 3 | 3 | 0.031 | 98348820 | 104054109 | tier1 | In-frame | 5098 | NA | 0.36177 |
| LIHC | TCGA-ED-A97K-01A | TCGA-ED-A97K | DPYD|RGS5 | DPYD | RGS5 | 1 | 1 | -1 | -1 | 7 | 6 | 6 | 0.26 | 98348820 | 163138158 | tier1 | Out-of-frame | 5097 | NA | 0.35332 |
| UCEC | TCGA-AJ-A3BD-01A | TCGA-AJ-A3BD | DPYD|ALKBH3 | DPYD | ALKBH3 | 1 | 11 | -1 | 1 | 4 | 4 | 4 | 0.23 | 98386440 | 43923066 | tier2 | In-frame | 5094 | NA | 0.33946 |
| PRAD | TCGA-EJ-AB27-01A | TCGA-EJ-AB27 | PTAR1|FAM108B1 | PTAR1 | FAM108B1 | 9 | 9 | -1 | -1 | 18 | 13 | 12 | 0.92 | 72356708 | 74477523 | tier1 | Out-of-frame | 13745 | NA | 0.34449 |
| SARC | TCGA-DX-A48N-01A | TCGA-DX-A48N | PTAR1|PIP5K1B | PTAR1 | PIP5K1B | 9 | 9 | -1 | 1 | 28 | 15 | 14 | 0.27 | 72347055 | 71503897 | tier1 | In-frame | 13746 | NA | 0.35614 |
| GBM | TCGA-06-2558-01A | TCGA-06-2558 | VWC2|RAB20 | VWC2 | RAB20 | 7 | 13 | 1 | -1 | 2 | 3 | 3 | 0.029 | 49815727 | 111176544 | tier2 | Out-of-frame | 19697 | NA | 0 |
| LGG | TCGA-DU-A5TY-01A | TCGA-DU-A5TY | LRRK2|GXYLT1 | LRRK2 | GXYLT1 | 12 | 12 | 1 | -1 | 4 | 12 | 8 | 0.058 | 40619442 | 42512973 | tier1 | Out-of-frame | 9616 | NA | 0.34484 |
| LIHC | TCGA-G3-A7M9-01A | TCGA-G3-A7M9 | RELN|SLC25A26 | RELN | SLC25A26 | 7 | 3 | -1 | 1 | 8 | 3 | 3 | 0.038 | 103130189 | 66419902 | tier1 | In-frame | 14542 | NA | 0 |
| LUSC | TCGA-68-8250-01A | TCGA-68-8250 | RELN|CHRM2 | RELN | CHRM2 | 7 | 7 | -1 | 1 | 5 | 5 | 3 | 0.7 | 103191514 | 136635750 | tier1 | CDS-5UTR | 14539 | non-validated | 0 |
| LIHC | TCGA-CC-A8HV-01A | TCGA-CC-A8HV | RELN|ORC5 | RELN | ORC5 | 7 | 7 | -1 | -1 | 3 | 1 | 1 | 0.84 | 103175763 | 103767340 | tier2 | In-frame | 14540 | NA | 0 |
| PRAD | TCGA-KK-A5A1-01A | TCGA-KK-A5A1 | RELN|ORC5 | RELN | ORC5 | 7 | 7 | -1 | -1 | 4 | 5 | 5 | 0.84 | 103270387 | 103767340 | tier1 | In-frame | 14541 | NA | 0 |
| BRCA | TCGA-OL-A5D6-01A | TCGA-OL-A5D6 | APOD|CLDN7 | APOD | CLDN7 | 3 | 17 | -1 | -1 | 2 | 3 | 3 | 0.97 | 195295573 | 7166264 | tier3 | 3UTR-5UTR | 1138 | NA | 0.35594 |
| TGCT | TCGA-2G-AAFI-01A | TCGA-2G-AAFI | SF3B3|ADAM12 | SF3B3 | ADAM12 | 16 | 10 | 1 | -1 | 12 | 22 | 15 | 2 | 70604052 | 127967557 | tier2 | In-frame | 15728 | NA | 0 |
| BLCA | TCGA-G2-A2ES-01A | TCGA-G2-A2ES | SF3B3|DDX19B | SF3B3 | DDX19B | 16 | 16 | 1 | 1 | 5 | 7 | 6 | 0.066 | 70573110 | 70346512 | tier1 | Out-of-frame | 15732 | NA | 0 |
| BRCA | TCGA-AQ-A54N-01A | TCGA-AQ-A54N | SF3B3|COG4 | SF3B3 | COG4 | 16 | 16 | 1 | -1 | 43 | 43 | 39 | 0.058 | 70569323 | 70543924 | tier1 | In-frame | 15730 | NA | 0 |
| ESCA | TCGA-L5-A4OQ-01A | TCGA-L5-A4OQ | SF3B3|DDX19B | SF3B3 | DDX19B | 16 | 16 | 1 | 1 | 2 | 14 | 13 | 0.066 | 70573110 | 70346512 | tier2 | Out-of-frame | 15733 | NA | 0 |
| GBM | TCGA-26-5133-01A | TCGA-26-5133 | SF3B3|DDX19B | SF3B3 | DDX19B | 16 | 16 | 1 | 1 | 3 | 7 | 7 | 0.066 | 70595687 | 70358488 | tier1 | In-frame | 15731 | NA | 0 |
| LUAD | TCGA-44-7667-01A | TCGA-44-7667 | SF3B3|CDH15 | SF3B3 | CDH15 | 16 | 16 | 1 | 1 | 123 | 166 | 147 | 0.71 | 70578436 | 89245824 | tier1 | In-frame | 15729 | NA | 0 |
| PRAD | TCGA-EJ-7782-01A | TCGA-EJ-7782 | IL1RAPL2|STK39 | IL1RAPL2 | STK39 | X | 2 | 1 | -1 | 8 | 7 | 7 | 0.12 | 104478688 | 168821236 | tier1 | Out-of-frame | 8177 | NA | 0.37242 |
| LIHC | TCGA-KR-A7K8-01A | TCGA-KR-A7K8 | S100A13|GBA | S100A13 | GBA | 1 | 1 | -1 | -1 | 2 | 5 | 4 | 100 | 153598796 | 155210971 | tier2 | CDS-5UTR | 15223 | NA | 0 |
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