Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| PRAD | TCGA-YL-A8SR-01B | TCGA-YL-A8SR | EYS|BAI3 | EYS | BAI3 | 6 | 6 | -1 | 1 | 6 | 2 | 2 | 0.054 | 66005756 | 70034764 | tier1 | Out-of-frame | 5953 | NA | 0.35751 |
| KIRP | TCGA-P4-A5EB-01A | TCGA-P4-A5EB | MAPK12|SSTR3 | MAPK12 | SSTR3 | 22 | 22 | -1 | -1 | 7 | 4 | 4 | 0.08 | 50693626 | 37603878 | tier1 | CDS-5UTR | 9939 | NA | 0.38815 |
| BRCA | TCGA-A8-A085-01A | TCGA-A8-A085 | COL4A5|RGAG1 | COL4A5 | RGAG1 | X | X | 1 | 1 | 381 | 99 | 75 | 1.3 | 107683436 | 109688381 | tier1 | CDS-5UTR | 4033 | NA | 0.36283 |
| LUSC | TCGA-77-A5GH-01A | TCGA-77-A5GH | COL4A5|RNF128 | COL4A5 | RNF128 | X | X | 1 | 1 | 3 | 3 | 2 | 0.19 | 107829977 | 106016143 | tier1 | In-frame | 4034 | NA | 0.36863 |
| LUSC | TCGA-43-3920-01A | TCGA-43-3920 | COL4A5|XRCC4 | COL4A5 | XRCC4 | X | 5 | 1 | 1 | 2 | 1 | 1 | 1.4 | 107683436 | 82648944 | tier3 | Out-of-frame | 4035 | non-validated | 0.38051 |
| CESC | TCGA-UC-A7PD-01A | TCGA-UC-A7PD | AGRN|BAD | AGRN | BAD | 1 | 11 | 1 | -1 | 72 | 34 | 31 | 1 | 957842 | 64039275 | tier1 | In-frame | 670 | NA | 0.36591 |
| KIRP | TCGA-EV-5902-01A | TCGA-EV-5902 | AGRN|SIAE | AGRN | SIAE | 1 | 11 | 1 | -1 | 2 | 8 | 8 | 1.5 | 991492 | 124543777 | tier3 | NA | 673 | NA | 0.34685 |
| BRCA | TCGA-BH-A0DK-01A | TCGA-BH-A0DK | AGRN|NOC4L | AGRN | NOC4L | 1 | 12 | 1 | 1 | 2 | 2 | 2 | 0.12 | 970704 | 132635526 | tier3 | In-frame | 672 | NA | 0.3565 |
| ESCA | TCGA-R6-A8W5-01B | TCGA-R6-A8W5 | AGRN|ZC3H18 | AGRN | ZC3H18 | 1 | 16 | 1 | 1 | 20 | 198 | 177 | 0.08 | 980903 | 88664586 | tier1 | In-frame | 674 | NA | 0.34962 |
| LUSC | TCGA-39-5029-01A | TCGA-39-5029 | AGRN|NOC4L | AGRN | NOC4L | 1 | 12 | 1 | 1 | 2 | 4 | 3 | 0.12 | 970704 | 132635526 | tier3 | In-frame | 671 | NA | 0.3565 |
| PRAD | TCGA-KK-A7AQ-01A | TCGA-KK-A7AQ | PLA2G2A|FBLN1 | PLA2G2A | FBLN1 | 1 | 22 | -1 | 1 | 2 | 8 | 1 | 1.2 | 20301931 | 45914462 | tier4 | NA | 12934 | NA | 0.36376 |
| PRAD | TCGA-G9-6348-01A | TCGA-G9-6348 | PLA2G2A|ITGA6 | PLA2G2A | ITGA6 | 1 | 2 | -1 | 1 | 2 | 14 | 12 | 0.017 | 20301931 | 173351992 | tier3 | 3UTR-CDS | 12935 | NA | 0.37049 |
| PRAD | TCGA-YL-A9WH-01A | TCGA-YL-A9WH | PLA2G2A|PLAT | PLA2G2A | PLAT | 1 | 8 | -1 | -1 | 2 | 73 | 45 | 1.1 | 20301925 | 42051245 | tier3 | NA | 12937 | NA | 0.37417 |
| PRAD | TCGA-EJ-5527-01A | TCGA-EJ-5527 | PLA2G2A|CLCN3 | PLA2G2A | CLCN3 | 1 | 4 | -1 | 1 | 2 | 22 | 10 | 0.8 | 20301925 | 170623929 | tier4 | NA | 12933 | NA | 0.36593 |
| PRAD | TCGA-G9-7525-01A | TCGA-G9-7525 | PLA2G2A|MBTPS1 | PLA2G2A | MBTPS1 | 1 | 16 | -1 | -1 | 2 | 883 | 861 | 0.52 | 20301931 | 84103643 | tier3 | 3UTR-CDS | 12936 | NA | 0.35452 |
| PRAD | TCGA-CH-5766-01A | TCGA-CH-5766 | PLA2G2A|TAF15 | PLA2G2A | TAF15 | 1 | 17 | -1 | 1 | 2 | 4 | 4 | 100 | 20301931 | 34147336 | tier3 | 3UTR-CDS | 12938 | NA | 0.3761 |
| HNSC | TCGA-QK-A6V9-01A | TCGA-QK-A6V9 | PLSCR1|MACROD2 | PLSCR1 | MACROD2 | 3 | 20 | -1 | 1 | 10 | 12 | 12 | 1.4 | 146234793 | 16021846 | tier1 | Out-of-frame | 13049 | NA | 0.37073 |
| BRCA | TCGA-A2-A0CL-01A | TCGA-A2-A0CL | COL25A1|CCDC109B | COL25A1 | CCDC109B | 4 | 4 | -1 | 1 | 8 | 9 | 9 | 0.77 | 109762851 | 110569640 | tier1 | NA | 4008 | NA | 0.35754 |
| BRCA | TCGA-E2-A14Z-01A | TCGA-E2-A14Z | DPYD|EDIL3 | DPYD | EDIL3 | 1 | 5 | -1 | -1 | 3 | 2 | 2 | 0.061 | 97700408 | 83476339 | tier1 | Out-of-frame | 5096 | NA | 0.36164 |
| OV | TCGA-13-1510-01A | TCGA-13-1510 | DPYD|CSNK1G1 | DPYD | CSNK1G1 | 1 | 15 | -1 | -1 | 4 | 12 | 12 | 4.5 | 98386440 | 64551440 | tier1 | Out-of-frame | 5095 | NA | 0.37142 |
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