Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-BH-A0DK-01A | TCGA-BH-A0DK | THSD4|LRRC49 | THSD4 | LRRC49 | 15 | 15 | 1 | 1 | 3 | 3 | 3 | 0.91 | 71389345 | 71329518 | tier1 | 5UTR-CDS | 17802 | NA | 0 |
| BRCA | TCGA-C8-A26Z-01A | TCGA-C8-A26Z | THSD4|LRRC49 | THSD4 | LRRC49 | 15 | 15 | 1 | 1 | 12 | 21 | 17 | 0.91 | 71704162 | 71185923 | tier1 | In-frame | 17804 | NA | 0 |
| BRCA | TCGA-EW-A2FS-01A | TCGA-EW-A2FS | THSD4|LRRC49 | THSD4 | LRRC49 | 15 | 15 | 1 | 1 | 45 | 59 | 53 | 0.91 | 71447271 | 71272440 | tier1 | In-frame | 17805 | NA | 0 |
| BRCA | TCGA-GI-A2C8-01A | TCGA-GI-A2C8 | THSD4|LRRC49 | THSD4 | LRRC49 | 15 | 15 | 1 | 1 | 179 | 164 | 150 | 0.91 | 71447271 | 71329518 | tier1 | Out-of-frame | 17806 | NA | 0 |
| CESC | TCGA-VS-A8QF-01A | TCGA-VS-A8QF | THSD4|C15orf60 | THSD4 | C15orf60 | 15 | 15 | 1 | 1 | 8 | 9 | 9 | 3.6 | 71704162 | 73832826 | tier1 | In-frame | 17799 | NA | 0 |
| CESC | TCGA-C5-A2LT-01A | TCGA-C5-A2LT | THSD4|LRRC49 | THSD4 | LRRC49 | 15 | 15 | 1 | 1 | 2 | 3 | 3 | 0.91 | 71507738 | 71256124 | tier3 | In-frame | 17803 | non-validated | 0 |
| KICH | TCGA-KL-8341-01A | TCGA-KL-8341 | THSD4|ZNF710 | THSD4 | ZNF710 | 15 | 15 | 1 | 1 | 5 | 1 | 1 | 0.43 | 71549054 | 90610342 | tier2 | CDS-5UTR | 17808 | validated | 0 |
| PRAD | TCGA-XQ-A8TA-01A | TCGA-XQ-A8TA | SEMA4D|RGS3 | SEMA4D | RGS3 | 9 | 9 | -1 | 1 | 2 | 2 | 2 | 0.93 | 92112834 | 116241771 | tier2 | 5UTR-CDS | 15564 | NA | 0 |
| ESCA | TCGA-Q9-A6FW-01A | TCGA-Q9-A6FW | DMBT1|ARMS2 | DMBT1 | ARMS2 | 10 | 10 | 1 | 1 | 12 | 27 | 27 | 0.23 | 124380896 | 124216423 | tier1 | Out-of-frame | 4906 | NA | 0.3521 |
| LUAD | TCGA-99-AA5R-01A | TCGA-99-AA5R | COL14A1|SREBF2 | COL14A1 | SREBF2 | 8 | 22 | 1 | 1 | 5 | 2 | 2 | 4.6 | 121241008 | 42271341 | tier1 | Out-of-frame | 3994 | NA | 0.37544 |
| LUAD | TCGA-44-5644-01A | TCGA-44-5644 | COL14A1|DEPTOR | COL14A1 | DEPTOR | 8 | 8 | 1 | 1 | 14 | 8 | 6 | 0.17 | 121209185 | 120940640 | tier1 | Out-of-frame | 3988 | NA | 0.36137 |
| OV | TCGA-57-1586-01A | TCGA-57-1586 | COL14A1|DEPTOR | COL14A1 | DEPTOR | 8 | 8 | 1 | 1 | 3 | 12 | 12 | 0.17 | 121160169 | 121061815 | tier1 | Out-of-frame | 3989 | NA | 0.36137 |
| OV | TCGA-61-1724-01A | TCGA-61-1724 | COL14A1|DEPTOR | COL14A1 | DEPTOR | 8 | 8 | 1 | 1 | 13 | 92 | 75 | 0.17 | 121174808 | 121061815 | tier2 | Out-of-frame | 3990 | NA | 0.36137 |
| UCEC | TCGA-AJ-A3I9-01A | TCGA-AJ-A3I9 | COL14A1|DEPTOR | COL14A1 | DEPTOR | 8 | 8 | 1 | 1 | 17 | 15 | 13 | 0.17 | 121298209 | 120977472 | tier1 | Out-of-frame | 3991 | NA | 0.36137 |
| UCEC | TCGA-AP-A5FX-01A | TCGA-AP-A5FX | COL14A1|DEPTOR | COL14A1 | DEPTOR | 8 | 8 | 1 | 1 | 7 | 8 | 8 | 0.17 | 121137579 | 121061815 | tier1 | 5UTR-CDS | 3992 | NA | 0.36137 |
| UCEC | TCGA-EO-A1Y7-01A | TCGA-EO-A1Y7 | COL14A1|DEPTOR | COL14A1 | DEPTOR | 8 | 8 | 1 | 1 | 21 | 18 | 6 | 0.17 | 121170485 | 121013764 | tier1 | In-frame | 3993 | NA | 0.36137 |
| BRCA | TCGA-AC-A8OQ-01A | TCGA-AC-A8OQ | WNT7B|LRP6 | WNT7B | LRP6 | 22 | 12 | -1 | -1 | 2 | 4 | 3 | 4.9 | 46372564 | 12334373 | tier2 | Out-of-frame | 19903 | NA | 0 |
| LUAD | TCGA-97-A4M3-01A | TCGA-97-A4M3 | WNT7B|DGCR8 | WNT7B | DGCR8 | 22 | 22 | -1 | 1 | 4 | 3 | 3 | 0.052 | 46345800 | 20093700 | tier1 | Out-of-frame | 19902 | NA | 0 |
| LGG | TCGA-TM-A7CF-01A | TCGA-TM-A7CF | EYS|KIAA1543 | EYS | KIAA1543 | 6 | 19 | -1 | 1 | 2 | 2 | 2 | 0.45 | 65300116 | 7670112 | tier2 | In-frame | 5954 | non-validated | 0.35172 |
| LGG | TCGA-TM-A7CF-02A | TCGA-TM-A7CF | EYS|STX11 | EYS | STX11 | 6 | 6 | -1 | 1 | 3 | 4 | 3 | 0.21 | 65596590 | 144507760 | tier1 | CDS-5UTR | 5956 | non-validated | 0.35662 |
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