Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LIHC | TCGA-XR-A8TG-01A | TCGA-XR-A8TG | BCAM|IGSF23 | BCAM | IGSF23 | 19 | 19 | 1 | 1 | 3 | 5 | 5 | 0.3 | 45318017 | 45130717 | tier1 | In-frame | 1962 | NA | 0.34882 |
| STAD | TCGA-BR-7959-01A | TCGA-BR-7959 | NPSR1|C7orf10 | NPSR1 | C7orf10 | 7 | 7 | 1 | 1 | 3 | 14 | 12 | 1.2 | 34698171 | 40899915 | tier1 | Out-of-frame | 11706 | NA | 0 |
| HNSC | TCGA-CR-7382-01A | TCGA-CR-7382 | COL4A1|ELK3 | COL4A1 | ELK3 | 13 | 12 | -1 | 1 | 2 | 1 | 1 | 0.08 | 110801318 | 96588323 | tier3 | 3UTR-5UTR | 4024 | non-validated | 0.37961 |
| KIRC | TCGA-BP-4986-01A | TCGA-BP-4986 | COL4A1|ZNF827 | COL4A1 | ZNF827 | 13 | 4 | -1 | -1 | 2 | 5 | 2 | 1.7 | 110801311 | 146859787 | tier3 | 3UTR-5UTR | 4026 | NA | 0.37034 |
| PAAD | TCGA-2J-AABP-01A | TCGA-2J-AABP | COL4A1|ZNF675 | COL4A1 | ZNF675 | 13 | 19 | -1 | -1 | 3 | 2 | 2 | 1.8 | 110959291 | 23845960 | tier1 | In-frame | 4025 | NA | 0.37563 |
| BRCA | TCGA-A7-A13D-01A | TCGA-A7-A13D | SIRT7|CCDC57 | SIRT7 | CCDC57 | 17 | 17 | -1 | -1 | 4 | 6 | 4 | 4.4 | 79872170 | 80059742 | tier1 | Out-of-frame | 15963 | non-validated | 0 |
| BLCA | TCGA-XF-AAML-01A | TCGA-XF-AAML | USP7|SMARCA2 | USP7 | SMARCA2 | 16 | 9 | -1 | 1 | 4 | 7 | 6 | 0.32 | 9057064 | 2161686 | tier1 | Out-of-frame | 19431 | NA | 0 |
| UCEC | TCGA-AX-A3G6-01A | TCGA-AX-A3G6 | USP7|AC009365.3 | USP7 | AC009365.3 | 16 | 7 | -1 | 1 | 3 | 6 | 6 | 0.38 | 9057064 | 132409536 | tier1 | CDS-5UTR | 19430 | NA | 0 |
| BRCA | TCGA-B6-A3ZX-01A | TCGA-B6-A3ZX | TET3|ACTG2 | TET3 | ACTG2 | 2 | 2 | 1 | 1 | 25 | 231 | 206 | 0.39 | 74230293 | 74135800 | tier1 | NA | 17673 | NA | 0 |
| BRCA | TCGA-E2-A1AZ-01A | TCGA-E2-A1AZ | TET3|ACTG2 | TET3 | ACTG2 | 2 | 2 | 1 | 1 | 6 | 10 | 7 | 0.39 | 74230293 | 74128403 | tier1 | NA | 17674 | NA | 0 |
| BRCA | TCGA-C8-A135-01A | TCGA-C8-A135 | TET3|C2orf78 | TET3 | C2orf78 | 2 | 2 | 1 | 1 | 8 | 5 | 5 | 0.17 | 74275538 | 74040604 | tier1 | In-frame | 17675 | NA | 0 |
| BRCA | TCGA-BH-A0BZ-01A | TCGA-BH-A0BZ | TET3|DGUOK | TET3 | DGUOK | 2 | 2 | 1 | 1 | 40 | 47 | 42 | 0.22 | 74317174 | 74184252 | tier1 | In-frame | 17676 | NA | 0 |
| LGG | TCGA-S9-A6WL-01A | TCGA-S9-A6WL | TET3|DGUOK | TET3 | DGUOK | 2 | 2 | 1 | 1 | 105 | 185 | 165 | 0.22 | 74230293 | 74173846 | tier1 | NA | 17677 | NA | 0 |
| PRAD | TCGA-EJ-7315-01A | TCGA-EJ-7315 | TET3|KRT1 | TET3 | KRT1 | 2 | 12 | 1 | -1 | 13 | 12 | 11 | 1.6 | 74317174 | 53072007 | tier1 | Out-of-frame | 17678 | NA | 0 |
| UCEC | TCGA-E6-A8L9-01A | TCGA-E6-A8L9 | TET3|SPECC1 | TET3 | SPECC1 | 2 | 17 | 1 | 1 | 2 | 3 | 3 | 0.13 | 74230293 | 19999944 | tier2 | NA | 17679 | NA | 0 |
| BRCA | TCGA-AO-A03P-01A | TCGA-AO-A03P | THSD4|ALDH1A2 | THSD4 | ALDH1A2 | 15 | 15 | 1 | -1 | 146 | 121 | 110 | 0.032 | 71704162 | 58306479 | tier1 | In-frame | 17798 | NA | 0 |
| STAD | TCGA-CG-4444-01A | TCGA-CG-4444 | THSD4|ADAM10 | THSD4 | ADAM10 | 15 | 15 | 1 | -1 | 6 | 9 | 8 | 0.039 | 71549054 | 58957396 | tier1 | In-frame | 17797 | NA | 0 |
| LUSC | TCGA-63-A5MP-01A | TCGA-63-A5MP | THSD4|WARS | THSD4 | WARS | 15 | 14 | 1 | -1 | 114 | 88 | 77 | 1 | 71839820 | 100803539 | tier1 | In-frame | 17807 | NA | 0 |
| BRCA | TCGA-A2-A0YH-01A | TCGA-A2-A0YH | THSD4|LRRC49 | THSD4 | LRRC49 | 15 | 15 | 1 | 1 | 3 | 2 | 2 | 0.91 | 71447271 | 71341748 | tier1 | In-frame | 17800 | NA | 0 |
| BRCA | TCGA-A2-A4S3-01A | TCGA-A2-A4S3 | THSD4|LRRC49 | THSD4 | LRRC49 | 15 | 15 | 1 | 1 | 29 | 29 | 28 | 0.91 | 71389345 | 71256124 | tier1 | 5UTR-CDS | 17801 | NA | 0 |
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