TCDA Transcript fusion

  FCG

  Home

  PDGs

  Search

  Expression

  Copy Number

  Mutation

  Transcript Fusion

  Download

  Help

  About

Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the PDGs in each cancer type

Show entries each page Jump to page Total Page: 541 Total entries: 10811
Showing page 292	first page \| previous page \| next page \| last page

Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
ACC	TCGA-OR-A5JM-01A	TCGA-OR-A5JM	TPCN1\|CTD-2021H9.3	TPCN1	CTD-2021H9.3	12	12	1	-1	328	177	166	0.37	113724899	71441459	tier1	Out-of-frame	18479	NA	0
BRCA	TCGA-A8-A0AD-01A	TCGA-A8-A0AD	MAPT\|MARCH10	MAPT	MARCH10	17	17	1	-1	15	70	66	0.23	44039836	60865960	tier1	Out-of-frame	9977	NA	0
LUSC	TCGA-66-2767-01A	TCGA-66-2767	FGF3\|LGR4	FGF3	LGR4	11	11	-1	-1	2	1	1	0.16	69631088	27434407	tier2	Out-of-frame	6453	NA	0.37264
BRCA	TCGA-UU-A93S-01A	TCGA-UU-A93S	PPARA\|FBLN1	PPARA	FBLN1	22	22	1	1	41	25	24	0.087	46594488	45942965	tier1	In-frame	13221	NA	0.38548
SKCM	TCGA-BF-AAOX-01A	TCGA-BF-AAOX	PPARA\|BCL2L13	PPARA	BCL2L13	22	22	1	1	15	11	3	0.038	46547873	18165980	tier1	5UTR-CDS	13220	NA	0.37973
KIRP	TCGA-P4-A5EB-01A	TCGA-P4-A5EB	PPARA\|SAMM50	PPARA	SAMM50	22	22	1	1	268	125	117	2.1	46572733	44384991	tier1	5UTR-CDS	13224	NA	0.38149
LIHC	TCGA-BC-A10X-01A	TCGA-BC-A10X	PPARA\|RAB2A	PPARA	RAB2A	22	8	1	1	32	28	28	0.4	46547873	61531139	tier1	5UTR-CDS	13223	NA	0.38714
SARC	TCGA-WK-A8XX-01A	TCGA-WK-A8XX	PPARA\|NFIC	PPARA	NFIC	22	19	1	1	3	7	6	0.86	46547873	3456548	tier1	5UTR-CDS	13222	NA	0.38225
UCS	TCGA-N7-A4Y8-01A	TCGA-N7-A4Y8	PPARA\|ATXN10	PPARA	ATXN10	22	22	1	1	33	22	18	0.098	46594488	46238871	tier2	In-frame	13219	NA	0.38026
OV	TCGA-04-1341-01A	TCGA-04-1341	EMID1\|CBY1	EMID1	CBY1	22	22	1	1	43	67	63	0.028	29630338	39069164	tier1	In-frame	5543	NA	0.34917
UCS	TCGA-N8-A56S-01A	TCGA-N8-A56S	EMID1\|KREMEN1	EMID1	KREMEN1	22	22	1	1	5	7	6	0.48	29611619	29490246	tier1	In-frame	5544	NA	0.35244
LAML	TCGA-AB-2904-03A	TCGA-AB-2904	GPR141\|ONECUT1	GPR141	ONECUT1	7	15	1	-1	2	2	2	0.094	37725186	53050044	tier3	NA	7363	NA	0.36905
LIHC	TCGA-BC-A216-01A	TCGA-BC-A216	TMPRSS6\|MPST	TMPRSS6	MPST	22	22	-1	1	11	15	13	0.02	37491591	37420233	tier1	CDS-5UTR	18288	validated	0
BRCA	TCGA-C8-A132-01A	TCGA-C8-A132	TMPRSS6\|EME1	TMPRSS6	EME1	22	17	-1	1	14	15	14	0.27	37485618	48455956	tier1	Out-of-frame	18287	NA	0
LIHC	TCGA-2Y-A9GT-01A	TCGA-2Y-A9GT	TMPRSS6\|PPP6R3	TMPRSS6	PPP6R3	22	11	-1	1	642	608	560	0.59	37499256	68377372	tier1	Out-of-frame	18289	NA	0
LIHC	TCGA-2Y-A9H2-01A	TCGA-2Y-A9H2	TMPRSS6\|PPP6R3	TMPRSS6	PPP6R3	22	11	-1	1	89	101	93	0.59	37499256	68377372	tier1	Out-of-frame	18290	NA	0
BRCA	TCGA-EW-A1PC-01B	TCGA-EW-A1PC	MITF\|MTERFD1	MITF	MTERFD1	3	8	1	-1	20	10	8	0.91	69788852	97270928	tier1	CDS-5UTR	10393	non-validated	0.37305
SKCM	TCGA-D3-A2JG-06A	TCGA-D3-A2JG	MITF\|FOXP1	MITF	FOXP1	3	3	1	-1	5	14	2	1.2	70017484	71007472	tier1	NA	10392	NA	0.37474
SKCM	TCGA-D3-A2JG-06A	TCGA-D3-A2JG	MITF\|PRICKLE2	MITF	PRICKLE2	3	3	1	-1	10	7	7	0.41	69788852	64085601	tier1	Out-of-frame	10394	NA	0.37226
PRAD	TCGA-HC-7209-01A	TCGA-HC-7209	BCAM\|PLAT	BCAM	PLAT	19	8	1	-1	2	1	1	0.067	45324677	42051245	tier3	NA	1963	NA	0.37722

Showing page 292

first page | previous page | next page | last page

  TCGA

  GDC

  NCI