TCDA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the PDGs in each cancer type

Show entries each page Jump to page Total Page: 541 Total entries: 10811
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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
LIHC	TCGA-2Y-A9GZ-01A	TCGA-2Y-A9GZ	RXRA\|WDR5	RXRA	WDR5	9	9	1	1	35	124	118	0.078	137218505	137017105	tier1	Out-of-frame	15209	NA	0
CESC	TCGA-C5-A8XH-01A	TCGA-C5-A8XH	RXRA\|BCAS3	RXRA	BCAS3	9	17	1	1	3	6	5	1.1	137218505	58945937	tier1	Out-of-frame	15206	NA	0
HNSC	TCGA-D6-8569-01A	TCGA-D6-8569	RXRA\|PRRC2B	RXRA	PRRC2B	9	9	1	1	7	3	3	0.27	137313651	134305477	tier1	CDS-5UTR	15208	NA	0
LIHC	TCGA-BC-A10Y-01A	TCGA-BC-A10Y	RXRA\|ALG9	RXRA	ALG9	9	11	1	-1	161	289	277	0.88	137218505	111657244	tier1	Out-of-frame	15205	NA	0
BRCA	TCGA-E2-A109-01A	TCGA-E2-A109	BTN3A2\|HIST1H2AC	BTN3A2	HIST1H2AC	6	6	1	1	9	5	5	0.17	26375026	26138282	tier1	3UTR-3UTR	2281	non-validated	0.35069
STAD	TCGA-CG-4462-01A	TCGA-CG-4462	SMYD4\|SERPINF1	SMYD4	SERPINF1	17	17	-1	1	17	13	12	2.9	1715265	1673146	tier1	In-frame	16474	NA	0
LIHC	TCGA-CC-A8HV-01A	TCGA-CC-A8HV	SMYD4\|AC091153.1	SMYD4	AC091153.1	17	17	-1	-1	5	4	3	0.18	1686329	4594737	tier1	Out-of-frame	16473	NA	0
UCEC	TCGA-A5-A1OH-01A	TCGA-A5-A1OH	SMYD4\|TUSC5	SMYD4	TUSC5	17	17	-1	1	2	2	1	0.55	1731155	1201545	tier3	Out-of-frame	16475	NA	0
LAML	TCGA-AB-2817-03A	TCGA-AB-2817	BCR\|ABL1	BCR	ABL1	22	9	1	1	38	26	22	0.035	23524426	133729451	tier1	In-frame	2054	NA	0.39627
LAML	TCGA-AB-2901-03A	TCGA-AB-2901	BCR\|ABL1	BCR	ABL1	22	9	1	1	28	26	25	0.035	23632600	133729451	tier2	In-frame	2055	NA	0.39627
LAML	TCGA-AB-2941-03A	TCGA-AB-2941	BCR\|ABL1	BCR	ABL1	22	9	1	1	47	46	43	0.035	23632600	133729451	tier1	In-frame	2056	NA	0.39627
LAML	TCGA-AB-2944-03A	TCGA-AB-2944	BCR\|ABL1	BCR	ABL1	22	9	1	1	3	3	2	0.035	23524426	133729451	tier1	In-frame	2057	NA	0.39627
BLCA	TCGA-FD-A43N-01A	TCGA-FD-A43N	BCR\|PPIL2	BCR	PPIL2	22	22	1	1	18	13	11	0.98	23615961	22048105	tier1	Out-of-frame	2063	NA	0.38607
BRCA	TCGA-C8-A27A-01A	TCGA-C8-A27A	BCR\|MOV10L1	BCR	MOV10L1	22	22	1	1	2	1	1	0.29	23524426	50530430	tier3	In-frame	2060	NA	0.38567
BRCA	TCGA-C8-A12Q-01A	TCGA-C8-A12Q	BCR\|MRVI1	BCR	MRVI1	22	11	1	-1	28	21	13	0.13	23524426	10673729	tier1	In-frame	2061	non-validated	0.3858
HNSC	TCGA-CV-7421-01A	TCGA-CV-7421	BCR\|TOM1	BCR	TOM1	22	22	1	1	3	4	4	0.19	23524426	35723264	tier1	Out-of-frame	2064	NA	0.38588
HNSC	TCGA-CX-7086-01A	TCGA-CX-7086	BCR\|UPB1	BCR	UPB1	22	22	1	1	8	7	6	1.2	23524426	24890077	tier1	CDS-5UTR	2065	non-validated	0.38419
LUSC	TCGA-77-7142-01A	TCGA-77-7142	BCR\|GNAZ	BCR	GNAZ	22	22	1	1	4	6	6	0.24	23524426	23437434	tier1	CDS-5UTR	2058	NA	0.38951
LUSC	TCGA-22-A5C4-01A	TCGA-22-A5C4	BCR\|MYH11	BCR	MYH11	22	16	1	-1	46	54	45	0.012	23637342	15880589	tier1	Out-of-frame	2062	NA	0.38698
UCS	TCGA-NA-A4QY-01A	TCGA-NA-A4QY	BCR\|HIC2	BCR	HIC2	22	22	1	1	2	2	2	0.041	23524426	21797048	tier4	CDS-5UTR	2059	NA	0.38962

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