Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-C8-A275-01A | TCGA-C8-A275 | SETD4|FTCD | SETD4 | FTCD | 21 | 21 | -1 | -1 | 30 | 17 | 14 | 0.3 | 37432645 | 47558837 | tier1 | 5UTR-CDS | 15701 | NA | 0 |
| LUSC | TCGA-46-6025-01A | TCGA-46-6025 | SETD4|B4GALT6 | SETD4 | B4GALT6 | 21 | 18 | -1 | -1 | 3 | 2 | 2 | 2.6 | 37412873 | 29246335 | tier1 | Out-of-frame | 15700 | NA | 0 |
| BRCA | TCGA-AN-A0AM-01A | TCGA-AN-A0AM | AGBL4|FAF1 | AGBL4 | FAF1 | 1 | 1 | -1 | -1 | 2 | 1 | 1 | 0.05 | 50489435 | 51121200 | tier2 | Out-of-frame | 637 | NA | 0.36415 |
| COAD | TCGA-CK-4952-01A | TCGA-CK-4952 | AGBL4|FAF1 | AGBL4 | FAF1 | 1 | 1 | -1 | -1 | 12 | 4 | 4 | 0.05 | 50489435 | 51210447 | tier1 | In-frame | 639 | NA | 0.36415 |
| LUAD | TCGA-49-4501-01A | TCGA-49-4501 | AGBL4|DTL | AGBL4 | DTL | 1 | 1 | -1 | 1 | 2 | 2 | 2 | 0.015 | 50489435 | 212216335 | tier3 | In-frame | 636 | NA | 0.34867 |
| PRAD | TCGA-V1-A8MF-01A | TCGA-V1-A8MF | AGBL4|FAF1 | AGBL4 | FAF1 | 1 | 1 | -1 | -1 | 6 | 6 | 6 | 0.05 | 49511256 | 50907195 | tier1 | In-frame | 640 | NA | 0.36415 |
| UCEC | TCGA-B5-A3FD-01A | TCGA-B5-A3FD | AGBL4|FAF1 | AGBL4 | FAF1 | 1 | 1 | -1 | -1 | 5 | 2 | 2 | 0.05 | 50489435 | 51121200 | tier1 | Out-of-frame | 638 | NA | 0.36415 |
| HNSC | TCGA-CN-4741-01A | TCGA-CN-4741 | PIP5K1C|MATK | PIP5K1C | MATK | 19 | 19 | -1 | -1 | 11 | 17 | 14 | 0.38 | 3700295 | 3781670 | tier1 | In-frame | 12878 | non-validated | 0.38133 |
| BRCA | TCGA-E9-A1N8-01A | TCGA-E9-A1N8 | PIP5K1C|C3 | PIP5K1C | C3 | 19 | 19 | -1 | -1 | 7 | 2 | 2 | 0.26 | 3647336 | 6719414 | tier1 | Out-of-frame | 12877 | NA | 0.36769 |
| BRCA | TCGA-OL-A5D7-01A | TCGA-OL-A5D7 | PIP5K1C|PALM | PIP5K1C | PALM | 19 | 19 | -1 | 1 | 34 | 35 | 33 | 0.042 | 3660964 | 746285 | tier1 | Out-of-frame | 12879 | NA | 0.35568 |
| LGG | TCGA-HT-A61B-01A | TCGA-HT-A61B | PIP5K1C|TJP3 | PIP5K1C | TJP3 | 19 | 19 | -1 | 1 | 2 | 2 | 2 | 0.046 | 3700295 | 3728602 | tier4 | Out-of-frame | 12881 | non-validated | 0.37065 |
| SARC | TCGA-DX-A1KZ-01A | TCGA-DX-A1KZ | PIP5K1C|PPM1H | PIP5K1C | PPM1H | 19 | 12 | -1 | -1 | 9 | 3 | 3 | 0.024 | 3700295 | 63226059 | tier1 | Out-of-frame | 12880 | NA | 0.36069 |
| COAD | TCGA-A6-4105-01A | TCGA-A6-4105 | WWOX|VAT1L | WWOX | VAT1L | 16 | 16 | 1 | 1 | 11 | 2 | 2 | 0.64 | 78198186 | 78005747 | tier1 | In-frame | 19929 | NA | 0 |
| STAD | TCGA-CD-8535-01A | TCGA-CD-8535 | WWOX|VAT1L | WWOX | VAT1L | 16 | 16 | 1 | 1 | 3 | 47 | 43 | 0.64 | 78133782 | 77850818 | tier1 | In-frame | 19930 | NA | 0 |
| GBM | TCGA-06-5415-01A | TCGA-06-5415 | WWOX|C15orf41 | WWOX | C15orf41 | 16 | 15 | 1 | 1 | 3 | 3 | 3 | 0.44 | 78198186 | 37100525 | tier1 | Out-of-frame | 19928 | validated | 0 |
| LIHC | TCGA-BC-A3KG-01A | TCGA-BC-A3KG | CYP4Z1|THOC4 | CYP4Z1 | THOC4 | 1 | 17 | 1 | -1 | 5 | 2 | 2 | 0.26 | 47533339 | 79848696 | tier1 | In-frame | 4506 | NA | 0.36539 |
| LIHC | TCGA-RC-A6M4-01A | TCGA-RC-A6M4 | CYP4F12|PTGER1 | CYP4F12 | PTGER1 | 19 | 19 | 1 | -1 | 97 | 91 | 76 | 0.008 | 15789215 | 14585149 | tier1 | CDS-5UTR | 4505 | NA | 0.35246 |
| BRCA | TCGA-BH-A0HL-01A | TCGA-BH-A0HL | KLHL32|ROBO1 | KLHL32 | ROBO1 | 6 | 3 | 1 | -1 | 2 | 2 | 2 | 1 | 97424053 | 78988077 | tier3 | Out-of-frame | 9071 | NA | 0.37451 |
| BRCA | TCGA-AC-A2BK-01A | TCGA-AC-A2BK | THBS2|NME4 | THBS2 | NME4 | 6 | 16 | -1 | 1 | 3 | 3 | 3 | 0.021 | 169646292 | 448990 | tier1 | In-frame | 17767 | non-validated | 0 |
| LIHC | TCGA-2Y-A9H0-01A | TCGA-2Y-A9H0 | RXRA|KCNT2 | RXRA | KCNT2 | 9 | 1 | 1 | -1 | 7 | 14 | 14 | 0.51 | 137218505 | 196461471 | tier1 | Out-of-frame | 15207 | NA | 0 |
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