TCDA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the PDGs in each cancer type

Show entries each page Jump to page Total Page: 541 Total entries: 10811
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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
ACC	TCGA-OR-A5J2-01A	TCGA-OR-A5J2	DLK1\|THSD4	DLK1	THSD4	14	15	1	1	2	20	6	0.55	101201464	72072881	tier4	3UTR-CDS	4904	NA	0.35429
PCPG	TCGA-WB-A81T-01A	TCGA-WB-A81T	DLK1\|AC011333.1	DLK1	AC011333.1	14	5	1	1	2	16	6	0.15	101201464	173473096	tier4	NA	4900	NA	0.35016
UCS	TCGA-NG-A4VU-01A	TCGA-NG-A4VU	DLK1\|CCT5	DLK1	CCT5	14	5	1	1	2	18	4	100	101201464	10250033	tier4	3UTR-5UTR	4901	NA	0.36863
ACC	TCGA-PK-A5H9-01A	TCGA-PK-A5H9	P4HB\|ERBB3	P4HB	ERBB3	17	12	-1	1	2	20	18	0.54	79801042	56492035	tier3	NA	12142	NA	0.38534
CESC	TCGA-EA-A5FO-01A	TCGA-EA-A5FO	P4HB\|PLAT	P4HB	PLAT	17	8	-1	-1	2	30	25	0.25	79801042	42051245	tier3	NA	12150	NA	0.37812
BLCA	TCGA-E7-A677-01A	TCGA-E7-A677	P4HB\|CLCN3	P4HB	CLCN3	17	4	-1	1	2	36	28	0.61	79801037	170623929	tier3	NA	12139	NA	0.37133
PRAD	TCGA-EJ-7125-01A	TCGA-EJ-7125	P4HB\|C7	P4HB	C7	17	5	-1	1	2	62	57	0.003	79801042	40954982	tier4	NA	12137	NA	0.36873
LUSC	TCGA-NC-A5HF-01A	TCGA-NC-A5HF	P4HB\|L3MBTL4	P4HB	L3MBTL4	17	18	-1	-1	39	31	30	0.42	79813018	6093527	tier1	Out-of-frame	12144	NA	0.36755
PRAD	TCGA-KC-A7F5-01A	TCGA-KC-A7F5	P4HB\|CTSF	P4HB	CTSF	17	11	-1	-1	2	3	2	0.053	79801042	66334990	tier4	NA	12141	NA	0.36509
BLCA	TCGA-G2-A2ES-01A	TCGA-G2-A2ES	P4HB\|ZNFX1	P4HB	ZNFX1	17	20	-1	-1	2	7	6	0.19	79801042	47863418	tier4	NA	12157	NA	0.36564
BRCA	TCGA-D8-A1JI-01A	TCGA-D8-A1JI	P4HB\|PLEKHA5	P4HB	PLEKHA5	17	12	-1	1	2	27	20	0.049	79801037	19441012	tier4	NA	12151	NA	0.36753
HNSC	TCGA-CR-7383-01A	TCGA-CR-7383	P4HB\|CSDA	P4HB	CSDA	17	12	-1	-1	2	25	9	2	79801042	10871742	tier3	NA	12140	NA	0.37804
KIRC	TCGA-CZ-5469-01A	TCGA-CZ-5469	P4HB\|SNW1	P4HB	SNW1	17	14	-1	-1	2	7	2	0.69	79801037	78189203	tier4	3UTR-CDS	12153	NA	0.36905
LGG	TCGA-E1-5318-01A	TCGA-E1-5318	P4HB\|SOS1	P4HB	SOS1	17	2	-1	-1	2	2	2	2.7	79801042	39222528	tier3	NA	12154	non-validated	0.3877
LUAD	TCGA-69-8255-01A	TCGA-69-8255	P4HB\|TPT1	P4HB	TPT1	17	13	-1	-1	2	1	1	1.2	79801410	45915293	tier3	3UTR-5UTR	12155	NA	0.36745
PRAD	TCGA-G9-6366-01A	TCGA-G9-6366	P4HB\|CCT5	P4HB	CCT5	17	5	-1	1	3	4	2	1.2	79801037	10250033	tier1	3UTR-5UTR	12138	NA	0.37233
PRAD	TCGA-HC-7210-01A	TCGA-HC-7210	P4HB\|FAR1	P4HB	FAR1	17	11	-1	1	2	8	5	1.9	79801037	13744912	tier3	NA	12143	NA	0.36697
PRAD	TCGA-EJ-7784-01A	TCGA-EJ-7784	P4HB\|MYO6	P4HB	MYO6	17	6	-1	1	2	21	4	0.065	79801037	76595721	tier4	3UTR-CDS	12145	NA	0.37807
PRAD	TCGA-EJ-5525-01A	TCGA-EJ-5525	P4HB\|NDUFV1	P4HB	NDUFV1	17	11	-1	1	2	14	11	0.042	79801037	67375697	tier3	NA	12146	NA	0.3651
PRAD	TCGA-EJ-A46G-01A	TCGA-EJ-A46G	P4HB\|NDUFV1	P4HB	NDUFV1	17	11	-1	1	2	68	56	0.042	79801037	67375697	tier3	NA	12147	NA	0.3651

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