Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| COAD | TCGA-AD-6965-01A | TCGA-AD-6965 | TCN2|THOC5 | TCN2 | THOC5 | 22 | 22 | 1 | -1 | 8 | 8 | 7 | 0.43 | 31010488 | 29908125 | tier1 | In-frame | 17612 | NA | 0 |
| HNSC | TCGA-QK-A8Z9-01B | TCGA-QK-A8Z9 | SP140L|PDE6D | SP140L | PDE6D | 2 | 2 | 1 | -1 | 12 | 23 | 22 | 0.15 | 231256944 | 232603912 | tier1 | NA | 16636 | NA | 0 |
| PRAD | TCGA-EJ-5518-01A | TCGA-EJ-5518 | SMYD3|COPA | SMYD3 | COPA | 1 | 1 | -1 | -1 | 18 | 7 | 6 | 0.92 | 245927343 | 160305112 | tier1 | In-frame | 16463 | NA | 0 |
| BLCA | TCGA-DK-AA6W-01A | TCGA-DK-AA6W | SMYD3|ZNF695 | SMYD3 | ZNF695 | 1 | 1 | -1 | -1 | 34 | 31 | 10 | 0.64 | 246670356 | 247109129 | tier1 | 5UTR-CDS | 16471 | NA | 0 |
| BRCA | TCGA-A2-A25B-01A | TCGA-A2-A25B | SMYD3|TFB2M | SMYD3 | TFB2M | 1 | 1 | -1 | -1 | 6 | 5 | 4 | 1.2 | 246670356 | 246711909 | tier1 | 5UTR-CDS | 16466 | non-validated | 0 |
| BRCA | TCGA-E9-A1N6-01A | TCGA-E9-A1N6 | SMYD3|WLS | SMYD3 | WLS | 1 | 1 | -1 | -1 | 21 | 14 | 8 | 0.52 | 246518333 | 68659910 | tier1 | Out-of-frame | 16468 | NA | 0 |
| ESCA | TCGA-LN-A4A1-01A | TCGA-LN-A4A1 | SMYD3|ZNF695 | SMYD3 | ZNF695 | 1 | 1 | -1 | -1 | 2 | 21 | 19 | 0.64 | 246670356 | 247131094 | tier2 | 5UTR-CDS | 16472 | validated | 0 |
| HNSC | TCGA-CN-6018-01A | TCGA-CN-6018 | SMYD3|ZNF695 | SMYD3 | ZNF695 | 1 | 1 | -1 | -1 | 12 | 3 | 3 | 0.64 | 246670356 | 247131094 | tier1 | 5UTR-CDS | 16470 | NA | 0 |
| LUAD | TCGA-05-4250-01A | TCGA-05-4250 | SMYD3|EDARADD | SMYD3 | EDARADD | 1 | 1 | -1 | 1 | 6 | 3 | 2 | 1.9 | 246670356 | 236572516 | tier1 | 5UTR-CDS | 16464 | NA | 0 |
| PRAD | TCGA-EJ-7789-01A | TCGA-EJ-7789 | SMYD3|TRIM58 | SMYD3 | TRIM58 | 1 | 1 | -1 | 1 | 9 | 5 | 5 | 0.62 | 246490503 | 248023919 | tier1 | In-frame | 16467 | NA | 0 |
| SKCM | TCGA-D3-A51G-06A | TCGA-D3-A51G | SMYD3|RP11-439E19.8 | SMYD3 | RP11-439E19.8 | 1 | 1 | -1 | -1 | 14 | 5 | 5 | 100 | 246670356 | 246944359 | tier1 | NA | 16465 | NA | 0 |
| SKCM | TCGA-DA-A1I7-06A | TCGA-DA-A1I7 | SMYD3|ZMYM4 | SMYD3 | ZMYM4 | 1 | 1 | -1 | 1 | 13 | 3 | 3 | 1.3 | 246490503 | 35835630 | tier1 | In-frame | 16469 | NA | 0 |
| SKCM | TCGA-ER-A2NG-06A | TCGA-ER-A2NG | ROR1|IL12RB2 | ROR1 | IL12RB2 | 1 | 1 | 1 | 1 | 2 | 2 | 2 | 0.24 | 64475048 | 67787285 | tier2 | In-frame | 14901 | NA | 0 |
| LUAD | TCGA-44-6776-01A | TCGA-44-6776 | MUC1|SIAE | MUC1 | SIAE | 1 | 11 | -1 | -1 | 2 | 37 | 36 | 0.38 | 155158302 | 124543777 | tier3 | 3UTR-5UTR | 10854 | NA | 0.36823 |
| LUAD | TCGA-91-A4BD-01A | TCGA-91-A4BD | MUC1|PKLR | MUC1 | PKLR | 1 | 1 | -1 | -1 | 3 | 3 | 3 | 0.21 | 155161974 | 155263381 | tier1 | In-frame | 10853 | NA | 0.3703 |
| UCEC | TCGA-BK-A139-02A | TCGA-BK-A139 | MUC1|GBA | MUC1 | GBA | 1 | 1 | -1 | -1 | 115 | 75 | 70 | 2 | 155162577 | 155210508 | tier1 | Out-of-frame | 10852 | NA | 0.37152 |
| UCEC | TCGA-A5-A3LP-01A | TCGA-A5-A3LP | MUC1|FAM189B | MUC1 | FAM189B | 1 | 1 | -1 | -1 | 9 | 2 | 2 | 0.21 | 155161974 | 155220955 | tier1 | In-frame | 10851 | NA | 0.36789 |
| BRCA | TCGA-C8-A12P-01A | TCGA-C8-A12P | NR2F2|MSI2 | NR2F2 | MSI2 | 15 | 17 | 1 | 1 | 47 | 28 | 28 | 0.12 | 96869581 | 55607037 | tier1 | Out-of-frame | 11720 | NA | 0.3721 |
| ACC | TCGA-OR-A5JM-01A | TCGA-OR-A5JM | DLK1|STAT6 | DLK1 | STAT6 | 14 | 12 | 1 | -1 | 3 | 10 | 2 | 0.85 | 101201464 | 57496773 | tier1 | NA | 4902 | NA | 0.37401 |
| ACC | TCGA-OR-A5LM-01A | TCGA-OR-A5LM | DLK1|STAT6 | DLK1 | STAT6 | 14 | 12 | 1 | -1 | 2 | 24 | 4 | 0.85 | 101201464 | 57496773 | tier3 | NA | 4903 | NA | 0.37401 |
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