Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| PRAD | TCGA-ZG-A9L1-01A | TCGA-ZG-A9L1 | TMPRSS2|MLLT3 | TMPRSS2 | MLLT3 | 21 | 9 | -1 | -1 | 76 | 72 | 67 | 0.78 | 42851099 | 20620833 | tier1 | Out-of-frame | 18279 | NA | 0 |
| PRAD | TCGA-EJ-8469-01A | TCGA-EJ-8469 | TMPRSS2|MRPS6 | TMPRSS2 | MRPS6 | 21 | 21 | -1 | 1 | 469 | 286 | 260 | 0.11 | 42845252 | 35497641 | tier1 | Out-of-frame | 18281 | NA | 0 |
| PRAD | TCGA-EJ-8474-01A | TCGA-EJ-8474 | TMPRSS2|SARS | TMPRSS2 | SARS | 21 | 1 | -1 | 1 | 171 | 150 | 131 | 0.22 | 42860321 | 109766600 | tier1 | In-frame | 18284 | NA | 0 |
| SARC | TCGA-DX-A3U6-01A | TCGA-DX-A3U6 | CNTN2|PKP1 | CNTN2 | PKP1 | 1 | 1 | 1 | 1 | 50 | 13 | 9 | 0.13 | 205022383 | 201263070 | tier1 | In-frame | 3952 | non-validated | 0.37291 |
| BRCA | TCGA-A8-A097-01A | TCGA-A8-A097 | LRTOMT|NFIC | LRTOMT | NFIC | 11 | 19 | 1 | 1 | 7 | 5 | 4 | 1.1 | 71800211 | 3449012 | tier1 | In-frame | 9621 | NA | 0.36171 |
| BRCA | TCGA-A8-A08S-01A | TCGA-A8-A08S | LRTOMT|UVRAG | LRTOMT | UVRAG | 11 | 11 | 1 | 1 | 6 | 14 | 12 | 0.56 | 71791931 | 75718578 | tier1 | 5UTR-CDS | 9622 | validated | 0.34562 |
| LUSC | TCGA-63-A5MB-01A | TCGA-63-A5MB | KCNQ3|LRRC6 | KCNQ3 | LRRC6 | 8 | 8 | -1 | -1 | 4 | 1 | 1 | 1.1 | 133492394 | 133596026 | tier3 | Out-of-frame | 8604 | NA | 0.3603 |
| THYM | TCGA-ZB-A96L-01A | TCGA-ZB-A96L | KCNQ3|ZHX2 | KCNQ3 | ZHX2 | 8 | 8 | -1 | 1 | 2 | 1 | 1 | 3.1 | 133492394 | 123963532 | tier4 | CDS-5UTR | 8605 | NA | 0.36857 |
| UCEC | TCGA-A5-A7WK-01A | TCGA-A5-A7WK | GPR173|TGM7 | GPR173 | TGM7 | X | 15 | 1 | -1 | 3 | 2 | 1 | 0.11 | 53078666 | 43572149 | tier2 | 5UTR-CDS | 7372 | NA | 0.35 |
| BLCA | TCGA-GC-A3RD-01A | TCGA-GC-A3RD | IRAK1|MECP2 | IRAK1 | MECP2 | X | X | -1 | -1 | 38 | 21 | 14 | 0.009 | 153283457 | 153298008 | tier4 | Out-of-frame | 8335 | NA | 0.38659 |
| PRAD | TCGA-HC-7744-01A | TCGA-HC-7744 | ALDH1A3|VPS53 | ALDH1A3 | VPS53 | 15 | 17 | 1 | -1 | 2 | 6 | 4 | 0.15 | 101456831 | 505136 | tier4 | 3UTR-CDS | 798 | non-validated | 0.34387 |
| SARC | TCGA-DX-A1KZ-01A | TCGA-DX-A1KZ | SLIT3|ITPR2 | SLIT3 | ITPR2 | 5 | 12 | -1 | -1 | 14 | 10 | 8 | 0.3 | 168620483 | 26943160 | tier1 | In-frame | 16320 | NA | 0 |
| BRCA | TCGA-EW-A1P0-01A | TCGA-EW-A1P0 | SLIT3|HSD17B4 | SLIT3 | HSD17B4 | 5 | 5 | -1 | 1 | 21 | 10 | 4 | 0.95 | 168310270 | 118792010 | tier1 | Out-of-frame | 16319 | NA | 0 |
| BLCA | TCGA-G2-AA3B-01A | TCGA-G2-AA3B | EFNA5|MCC | EFNA5 | MCC | 5 | 5 | -1 | -1 | 3 | 1 | 1 | 0.45 | 107006190 | 112720909 | tier2 | In-frame | 5358 | NA | 0.37707 |
| BRCA | TCGA-E2-A1L7-01A | TCGA-E2-A1L7 | PLA2G6|TMEM184B | PLA2G6 | TMEM184B | 22 | 22 | -1 | -1 | 2 | 3 | 3 | 0.003 | 38565225 | 38622877 | tier3 | Out-of-frame | 12939 | NA | 0.349 |
| SKCM | TCGA-FS-A4F4-06A | TCGA-FS-A4F4 | PLA2G6|TMEM184B | PLA2G6 | TMEM184B | 22 | 22 | -1 | -1 | 3 | 11 | 11 | 0.003 | 38577791 | 38627340 | tier1 | 5UTR-CDS | 12940 | NA | 0.349 |
| UCEC | TCGA-D1-A3JP-01A | TCGA-D1-A3JP | TXNRD2|RTN4R | TXNRD2 | RTN4R | 22 | 22 | -1 | -1 | 6 | 13 | 11 | 0.02 | 19918553 | 20230633 | tier1 | In-frame | 18997 | NA | 0 |
| SARC | TCGA-HB-A3YV-01A | TCGA-HB-A3YV | TXNRD2|EVX1 | TXNRD2 | EVX1 | 22 | 7 | -1 | 1 | 4 | 6 | 6 | 0.025 | 19918553 | 27284667 | tier1 | In-frame | 18996 | NA | 0 |
| BRCA | TCGA-A8-A0A1-01A | TCGA-A8-A0A1 | PDE4B|JAK1 | PDE4B | JAK1 | 1 | 1 | 1 | -1 | 3 | 1 | 1 | 2.9 | 66798303 | 65352024 | tier2 | CDS-5UTR | 12472 | NA | 0.37901 |
| BRCA | TCGA-AR-A24Z-01A | TCGA-AR-A24Z | PDE4B|MOBKL2C | PDE4B | MOBKL2C | 1 | 1 | 1 | -1 | 4 | 4 | 3 | 0.022 | 66731770 | 47079043 | tier1 | In-frame | 12473 | non-validated | 0.35185 |
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