Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| PRAD | TCGA-ZG-A9L2-01A | TCGA-ZG-A9L2 | TMPRSS2|PDE9A | TMPRSS2 | PDE9A | 21 | 21 | -1 | 1 | 40 | 39 | 35 | 0.83 | 42866283 | 44163886 | tier1 | In-frame | 18282 | NA | 0 |
| STAD | TCGA-VQ-A8DZ-01A | TCGA-VQ-A8DZ | TMPRSS2|SETD4 | TMPRSS2 | SETD4 | 21 | 21 | -1 | -1 | 2 | 8 | 5 | 0.49 | 42860321 | 37429502 | tier2 | In-frame | 18285 | NA | 0 |
| PRAD | TCGA-KC-A4BR-01A | TCGA-KC-A4BR | TMPRSS2|GUCA2A | TMPRSS2 | GUCA2A | 21 | 1 | -1 | -1 | 76 | 40 | 35 | 0.22 | 42880008 | 42629281 | tier1 | 5UTR-CDS | 18276 | NA | 0 |
| HNSC | TCGA-P3-A6T8-01A | TCGA-P3-A6T8 | TMPRSS2|HSF2BP | TMPRSS2 | HSF2BP | 21 | 21 | -1 | -1 | 85 | 101 | 92 | 0.76 | 42843733 | 44949842 | tier1 | In-frame | 18277 | NA | 0 |
| PRAD | TCGA-G9-6371-01A | TCGA-G9-6371 | TMPRSS2|ARFGEF2 | TMPRSS2 | ARFGEF2 | 21 | 20 | -1 | 1 | 2 | 10 | 7 | 1 | 42837936 | 47615777 | tier2 | 3UTR-CDS | 18083 | NA | 0 |
| PRAD | TCGA-EJ-7784-01A | TCGA-EJ-7784 | TMPRSS2|ATF7IP | TMPRSS2 | ATF7IP | 21 | 12 | -1 | 1 | 361 | 513 | 469 | 2 | 42870046 | 14613429 | tier1 | Out-of-frame | 18084 | NA | 0 |
| PRAD | TCGA-EJ-5501-01A | TCGA-EJ-5501 | TMPRSS2|ETV1 | TMPRSS2 | ETV1 | 21 | 7 | -1 | -1 | 232 | 147 | 140 | 0.78 | 42879877 | 13978871 | tier1 | 5UTR-CDS | 18263 | NA | 0 |
| PRAD | TCGA-EJ-7788-01A | TCGA-EJ-7788 | TMPRSS2|ETV1 | TMPRSS2 | ETV1 | 21 | 7 | -1 | -1 | 419 | 139 | 116 | 0.78 | 42870046 | 13978871 | tier1 | Out-of-frame | 18264 | NA | 0 |
| PRAD | TCGA-HC-7818-01A | TCGA-HC-7818 | TMPRSS2|ETV1 | TMPRSS2 | ETV1 | 21 | 7 | -1 | -1 | 733 | 414 | 379 | 0.78 | 42866283 | 13971374 | tier4 | Out-of-frame | 18265 | NA | 0 |
| PRAD | TCGA-YL-A8SC-01A | TCGA-YL-A8SC | TMPRSS2|ETV1 | TMPRSS2 | ETV1 | 21 | 7 | -1 | -1 | 317 | 177 | 164 | 0.78 | 42879877 | 13978871 | tier1 | 5UTR-CDS | 18266 | NA | 0 |
| PRAD | TCGA-G9-6351-01A | TCGA-G9-6351 | TMPRSS2|ETV4 | TMPRSS2 | ETV4 | 21 | 17 | -1 | -1 | 3 | 1 | 1 | 0.96 | 42866283 | 41607549 | tier3 | In-frame | 18267 | NA | 0 |
| PRAD | TCGA-G9-6371-01A | TCGA-G9-6371 | TMPRSS2|ETV4 | TMPRSS2 | ETV4 | 21 | 17 | -1 | -1 | 155 | 10 | 9 | 0.96 | 42879877 | 41622735 | tier1 | 5UTR-CDS | 18268 | NA | 0 |
| PRAD | TCGA-HC-7077-01A | TCGA-HC-7077 | TMPRSS2|ETV4 | TMPRSS2 | ETV4 | 21 | 17 | -1 | -1 | 665 | 388 | 375 | 0.96 | 42870046 | 41623036 | tier1 | CDS-5UTR | 18269 | NA | 0 |
| PRAD | TCGA-HC-7079-01A | TCGA-HC-7079 | TMPRSS2|ETV4 | TMPRSS2 | ETV4 | 21 | 17 | -1 | -1 | 2 | 2 | 2 | 0.96 | 42870046 | 41623036 | tier3 | CDS-5UTR | 18270 | NA | 0 |
| PRAD | TCGA-KC-A7FD-01A | TCGA-KC-A7FD | TMPRSS2|ETV4 | TMPRSS2 | ETV4 | 21 | 17 | -1 | -1 | 293 | 92 | 84 | 0.96 | 42880008 | 41623036 | tier1 | 5UTR-5UTR | 18271 | NA | 0 |
| PRAD | TCGA-KK-A7AW-01A | TCGA-KK-A7AW | TMPRSS2|ETV4 | TMPRSS2 | ETV4 | 21 | 17 | -1 | -1 | 7 | 2 | 1 | 0.96 | 42880008 | 41622735 | tier4 | 5UTR-CDS | 18272 | NA | 0 |
| PRAD | TCGA-M7-A725-01A | TCGA-M7-A725 | TMPRSS2|ETV4 | TMPRSS2 | ETV4 | 21 | 17 | -1 | -1 | 120 | 35 | 32 | 0.96 | 42880008 | 41622735 | tier1 | 5UTR-CDS | 18273 | NA | 0 |
| PRAD | TCGA-KK-A7AZ-01A | TCGA-KK-A7AZ | TMPRSS2|ETV5 | TMPRSS2 | ETV5 | 21 | 3 | -1 | -1 | 115 | 100 | 92 | 0.14 | 42861434 | 185823731 | tier1 | CDS-5UTR | 18274 | NA | 0 |
| PRAD | TCGA-ZG-A9L5-01A | TCGA-ZG-A9L5 | TMPRSS2|ETV5 | TMPRSS2 | ETV5 | 21 | 3 | -1 | -1 | 1074 | 1014 | 930 | 0.14 | 42866283 | 185823731 | tier1 | CDS-5UTR | 18275 | NA | 0 |
| PRAD | TCGA-V1-A8WS-01A | TCGA-V1-A8WS | TMPRSS2|INPP4B | TMPRSS2 | INPP4B | 21 | 4 | -1 | -1 | 33 | 14 | 14 | 1 | 42879877 | 143191927 | tier1 | 5UTR-CDS | 18278 | NA | 0 |
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