Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| PRAD | TCGA-XJ-A9DI-01A | TCGA-XJ-A9DI | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 18 | 7 | 6 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18245 | NA | 0 |
| PRAD | TCGA-XJ-A9DK-01A | TCGA-XJ-A9DK | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 6 | 6 | 5 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18246 | NA | 0 |
| PRAD | TCGA-XQ-A8TB-01A | TCGA-XQ-A8TB | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 21 | 20 | 17 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18247 | NA | 0 |
| PRAD | TCGA-YL-A8HJ-01A | TCGA-YL-A8HJ | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 79 | 38 | 36 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18248 | NA | 0 |
| PRAD | TCGA-YL-A8HK-01A | TCGA-YL-A8HK | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 51 | 33 | 32 | 2 | 42870046 | 39956869 | tier1 | CDS-5UTR | 18249 | NA | 0 |
| PRAD | TCGA-YL-A8HL-01A | TCGA-YL-A8HL | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 71 | 32 | 26 | 2 | 42880008 | 39795483 | tier1 | 5UTR-CDS | 18250 | NA | 0 |
| PRAD | TCGA-YL-A8SA-01A | TCGA-YL-A8SA | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 79 | 65 | 62 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18251 | NA | 0 |
| PRAD | TCGA-YL-A8SF-01A | TCGA-YL-A8SF | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 153 | 174 | 161 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18252 | NA | 0 |
| PRAD | TCGA-YL-A8SL-01B | TCGA-YL-A8SL | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 38 | 17 | 17 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18253 | NA | 0 |
| PRAD | TCGA-YL-A8SP-01B | TCGA-YL-A8SP | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 31 | 24 | 23 | 2 | 42878372 | 39817544 | tier1 | NA | 18254 | NA | 0 |
| PRAD | TCGA-YL-A9WL-01A | TCGA-YL-A9WL | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 115 | 132 | 125 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18255 | NA | 0 |
| PRAD | TCGA-YL-A9WX-01A | TCGA-YL-A9WX | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 19 | 11 | 10 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18256 | NA | 0 |
| PRAD | TCGA-ZG-A8QZ-01A | TCGA-ZG-A8QZ | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 29 | 36 | 34 | 2 | 42870046 | 39817544 | tier2 | In-frame | 18257 | NA | 0 |
| PRAD | TCGA-ZG-A9L1-01A | TCGA-ZG-A9L1 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 10 | 7 | 7 | 2 | 42879877 | 39817544 | tier1 | 5UTR-CDS | 18258 | NA | 0 |
| PRAD | TCGA-ZG-A9L2-01A | TCGA-ZG-A9L2 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 9 | 4 | 4 | 2 | 42879877 | 39817544 | tier1 | 5UTR-CDS | 18259 | NA | 0 |
| PRAD | TCGA-ZG-A9L4-01A | TCGA-ZG-A9L4 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 42 | 10 | 9 | 2 | 42879877 | 39817544 | tier1 | 5UTR-CDS | 18260 | NA | 0 |
| PRAD | TCGA-ZG-A9LZ-01A | TCGA-ZG-A9LZ | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 41 | 25 | 23 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18261 | NA | 0 |
| PRAD | TCGA-ZG-A9N3-01A | TCGA-ZG-A9N3 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 3 | 6 | 6 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18262 | NA | 0 |
| PRAD | TCGA-FC-A6HD-01A | TCGA-FC-A6HD | TMPRSS2|BRAF | TMPRSS2 | BRAF | 21 | 7 | -1 | -1 | 63 | 73 | 61 | 1 | 42866283 | 140481493 | tier1 | Out-of-frame | 18085 | NA | 0 |
| PRAD | TCGA-CH-5762-01A | TCGA-CH-5762 | TMPRSS2|MORC3 | TMPRSS2 | MORC3 | 21 | 21 | -1 | 1 | 14 | 29 | 26 | 1.7 | 42870046 | 37705944 | tier1 | In-frame | 18280 | NA | 0 |
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