Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| PRAD | TCGA-QU-A6IN-01A | TCGA-QU-A6IN | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 7 | 23 | 20 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18225 | NA | 0 |
| PRAD | TCGA-TP-A8TT-01A | TCGA-TP-A8TT | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 18 | 30 | 26 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18226 | NA | 0 |
| PRAD | TCGA-V1-A8MK-01A | TCGA-V1-A8MK | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 5 | 6 | 6 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18227 | NA | 0 |
| PRAD | TCGA-V1-A8WS-01A | TCGA-V1-A8WS | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 101 | 100 | 94 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18228 | NA | 0 |
| PRAD | TCGA-V1-A9O9-01A | TCGA-V1-A9O9 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 217 | 315 | 309 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18229 | NA | 0 |
| PRAD | TCGA-V1-A9OY-01A | TCGA-V1-A9OY | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 6 | 2 | 1 | 2 | 42879877 | 39956869 | tier2 | 5UTR-5UTR | 18230 | NA | 0 |
| PRAD | TCGA-V1-A9ZG-01A | TCGA-V1-A9ZG | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 49 | 45 | 43 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18231 | NA | 0 |
| PRAD | TCGA-VN-A88K-01A | TCGA-VN-A88K | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 21 | 12 | 11 | 2 | 42870046 | 39956869 | tier1 | CDS-5UTR | 18232 | NA | 0 |
| PRAD | TCGA-VN-A88L-01A | TCGA-VN-A88L | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 114 | 152 | 140 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18233 | NA | 0 |
| PRAD | TCGA-VN-A88M-01A | TCGA-VN-A88M | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 10 | 11 | 10 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18234 | NA | 0 |
| PRAD | TCGA-VN-A88Q-01A | TCGA-VN-A88Q | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 49 | 51 | 48 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18235 | NA | 0 |
| PRAD | TCGA-VP-A872-01A | TCGA-VP-A872 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 12 | 25 | 24 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18236 | NA | 0 |
| PRAD | TCGA-VP-A875-01A | TCGA-VP-A875 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 29 | 17 | 16 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18237 | NA | 0 |
| PRAD | TCGA-VP-A876-01A | TCGA-VP-A876 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 33 | 36 | 34 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18238 | NA | 0 |
| PRAD | TCGA-VP-A879-01A | TCGA-VP-A879 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 18 | 11 | 8 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18239 | NA | 0 |
| PRAD | TCGA-VP-A87C-01A | TCGA-VP-A87C | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 23 | 12 | 11 | 2 | 42879877 | 39817544 | tier1 | 5UTR-CDS | 18240 | NA | 0 |
| PRAD | TCGA-VP-A87D-01A | TCGA-VP-A87D | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 85 | 65 | 61 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18241 | NA | 0 |
| PRAD | TCGA-VP-A87K-01A | TCGA-VP-A87K | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 115 | 91 | 80 | 2 | 42880008 | 39795483 | tier1 | 5UTR-CDS | 18242 | NA | 0 |
| PRAD | TCGA-X4-A8KQ-01A | TCGA-X4-A8KQ | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 144 | 83 | 70 | 2 | 42866283 | 39817544 | tier1 | Out-of-frame | 18243 | NA | 0 |
| PRAD | TCGA-XJ-A83F-01A | TCGA-XJ-A83F | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 168 | 353 | 328 | 2 | 42870046 | 39795483 | tier1 | Out-of-frame | 18244 | NA | 0 |
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