Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| PRAD | TCGA-KC-A7F6-01A | TCGA-KC-A7F6 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 15 | 19 | 17 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18205 | NA | 0 |
| PRAD | TCGA-KK-A59Y-01A | TCGA-KK-A59Y | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 13 | 7 | 7 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18206 | NA | 0 |
| PRAD | TCGA-KK-A6DY-01A | TCGA-KK-A6DY | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 140 | 84 | 77 | 2 | 42860321 | 39817544 | tier1 | Out-of-frame | 18207 | NA | 0 |
| PRAD | TCGA-KK-A6E1-01A | TCGA-KK-A6E1 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 104 | 37 | 35 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18208 | NA | 0 |
| PRAD | TCGA-KK-A6E2-01A | TCGA-KK-A6E2 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 176 | 122 | 112 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18209 | NA | 0 |
| PRAD | TCGA-KK-A6E4-01A | TCGA-KK-A6E4 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 9 | 7 | 5 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18210 | NA | 0 |
| PRAD | TCGA-KK-A6E6-01A | TCGA-KK-A6E6 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 22 | 13 | 13 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18211 | NA | 0 |
| PRAD | TCGA-KK-A7AU-01A | TCGA-KK-A7AU | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 17 | 17 | 15 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18212 | NA | 0 |
| PRAD | TCGA-KK-A7B1-01A | TCGA-KK-A7B1 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 71 | 61 | 59 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18213 | NA | 0 |
| PRAD | TCGA-KK-A7B2-01A | TCGA-KK-A7B2 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 48 | 26 | 24 | 2 | 42866283 | 39817544 | tier1 | Out-of-frame | 18214 | NA | 0 |
| PRAD | TCGA-KK-A7B4-01A | TCGA-KK-A7B4 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 50 | 36 | 34 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18215 | NA | 0 |
| PRAD | TCGA-KK-A8I4-01A | TCGA-KK-A8I4 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 13 | 10 | 10 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18216 | NA | 0 |
| PRAD | TCGA-KK-A8I8-01A | TCGA-KK-A8I8 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 21 | 10 | 10 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18217 | NA | 0 |
| PRAD | TCGA-KK-A8IA-01A | TCGA-KK-A8IA | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 29 | 21 | 18 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18218 | NA | 0 |
| PRAD | TCGA-KK-A8IC-01A | TCGA-KK-A8IC | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 53 | 47 | 40 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18219 | NA | 0 |
| PRAD | TCGA-KK-A8IH-01A | TCGA-KK-A8IH | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 162 | 80 | 73 | 2 | 42866283 | 39817544 | tier2 | Out-of-frame | 18220 | NA | 0 |
| PRAD | TCGA-KK-A8II-01A | TCGA-KK-A8II | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 58 | 24 | 24 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18221 | NA | 0 |
| PRAD | TCGA-KK-A8IM-01A | TCGA-KK-A8IM | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 15 | 20 | 20 | 2 | 42880008 | 39956869 | tier1 | 5UTR-5UTR | 18222 | NA | 0 |
| PRAD | TCGA-M7-A71Z-01A | TCGA-M7-A71Z | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 19 | 19 | 19 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18223 | NA | 0 |
| PRAD | TCGA-MG-AAMC-01A | TCGA-MG-AAMC | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 41 | 32 | 27 | 2 | 42879877 | 39817544 | tier1 | 5UTR-CDS | 18224 | NA | 0 |
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