Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| PRAD | TCGA-HC-A8D0-01A | TCGA-HC-A8D0 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 14 | 15 | 12 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18185 | NA | 0 |
| PRAD | TCGA-HC-A8D1-01A | TCGA-HC-A8D1 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 24 | 8 | 8 | 2 | 42879877 | 39817544 | tier1 | 5UTR-CDS | 18186 | NA | 0 |
| PRAD | TCGA-J4-8198-01A | TCGA-J4-8198 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 17 | 12 | 11 | 2 | 42880008 | 39817544 | tier2 | 5UTR-CDS | 18187 | NA | 0 |
| PRAD | TCGA-J4-A67K-01A | TCGA-J4-A67K | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 26 | 38 | 34 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18188 | NA | 0 |
| PRAD | TCGA-J4-A67L-01A | TCGA-J4-A67L | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 3 | 8 | 6 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18189 | NA | 0 |
| PRAD | TCGA-J4-A67R-01A | TCGA-J4-A67R | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 3 | 5 | 4 | 2 | 42879877 | 39817544 | tier1 | 5UTR-CDS | 18190 | NA | 0 |
| PRAD | TCGA-J4-A67S-01A | TCGA-J4-A67S | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 29 | 17 | 16 | 2 | 42880008 | 39817544 | tier2 | 5UTR-CDS | 18191 | NA | 0 |
| PRAD | TCGA-J4-A67T-01A | TCGA-J4-A67T | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 4 | 8 | 8 | 2 | 42880008 | 39956869 | tier1 | 5UTR-5UTR | 18192 | NA | 0 |
| PRAD | TCGA-J4-A6G1-01A | TCGA-J4-A6G1 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 2 | 5 | 3 | 2 | 42879877 | 39817544 | tier2 | 5UTR-CDS | 18193 | NA | 0 |
| PRAD | TCGA-J4-A6M7-01A | TCGA-J4-A6M7 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 99 | 60 | 54 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18194 | NA | 0 |
| PRAD | TCGA-J4-A83I-01A | TCGA-J4-A83I | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 48 | 38 | 37 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18195 | NA | 0 |
| PRAD | TCGA-J4-A83J-01A | TCGA-J4-A83J | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 8 | 7 | 6 | 2 | 42870046 | 39817544 | tier4 | In-frame | 18196 | NA | 0 |
| PRAD | TCGA-J4-A83K-01A | TCGA-J4-A83K | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 46 | 21 | 21 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18197 | NA | 0 |
| PRAD | TCGA-J4-AATV-01A | TCGA-J4-AATV | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 4 | 3 | 3 | 2 | 42879877 | 39956869 | tier1 | 5UTR-5UTR | 18198 | NA | 0 |
| PRAD | TCGA-J9-A52B-01A | TCGA-J9-A52B | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 136 | 86 | 81 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18199 | NA | 0 |
| PRAD | TCGA-J9-A8CK-01A | TCGA-J9-A8CK | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 89 | 64 | 58 | 2 | 42879877 | 39795483 | tier1 | 5UTR-CDS | 18200 | NA | 0 |
| PRAD | TCGA-J9-A8CM-01A | TCGA-J9-A8CM | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 24 | 23 | 21 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18201 | NA | 0 |
| PRAD | TCGA-KC-A4BN-01A | TCGA-KC-A4BN | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 13 | 4 | 4 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18202 | NA | 0 |
| PRAD | TCGA-KC-A4BR-01A | TCGA-KC-A4BR | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 14 | 9 | 8 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18203 | NA | 0 |
| PRAD | TCGA-KC-A4BV-01A | TCGA-KC-A4BV | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 28 | 14 | 13 | 2 | 42879877 | 39817544 | tier1 | 5UTR-CDS | 18204 | NA | 0 |
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