Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| PRAD | TCGA-HC-7081-01A | TCGA-HC-7081 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 23 | 12 | 12 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18165 | NA | 0 |
| PRAD | TCGA-HC-7209-01A | TCGA-HC-7209 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 35 | 23 | 21 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18166 | NA | 0 |
| PRAD | TCGA-HC-7212-01A | TCGA-HC-7212 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 99 | 95 | 79 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18167 | NA | 0 |
| PRAD | TCGA-HC-7213-01A | TCGA-HC-7213 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 30 | 15 | 14 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18168 | NA | 0 |
| PRAD | TCGA-HC-7230-01A | TCGA-HC-7230 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 61 | 59 | 53 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18169 | NA | 0 |
| PRAD | TCGA-HC-7231-01A | TCGA-HC-7231 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 21 | 24 | 22 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18170 | NA | 0 |
| PRAD | TCGA-HC-7232-01A | TCGA-HC-7232 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 44 | 34 | 32 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18171 | NA | 0 |
| PRAD | TCGA-HC-7744-01A | TCGA-HC-7744 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 53 | 55 | 47 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18172 | validated | 0 |
| PRAD | TCGA-HC-7747-01A | TCGA-HC-7747 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 6 | 3 | 3 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18173 | NA | 0 |
| PRAD | TCGA-HC-7818-01A | TCGA-HC-7818 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 6 | 3 | 3 | 2 | 42879877 | 39956869 | tier1 | 5UTR-5UTR | 18174 | NA | 0 |
| PRAD | TCGA-HC-7819-01A | TCGA-HC-7819 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 40 | 15 | 11 | 2 | 42880008 | 39817544 | tier2 | 5UTR-CDS | 18175 | NA | 0 |
| PRAD | TCGA-HC-8213-01A | TCGA-HC-8213 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 10 | 11 | 9 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18176 | NA | 0 |
| PRAD | TCGA-HC-8257-01A | TCGA-HC-8257 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 40 | 51 | 48 | 2 | 42870046 | 39956869 | tier1 | CDS-5UTR | 18177 | NA | 0 |
| PRAD | TCGA-HC-8259-01A | TCGA-HC-8259 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 30 | 20 | 17 | 2 | 42878372 | 39817544 | tier1 | NA | 18178 | NA | 0 |
| PRAD | TCGA-HC-8260-01A | TCGA-HC-8260 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 6 | 3 | 3 | 2 | 42879877 | 39817544 | tier4 | 5UTR-CDS | 18179 | NA | 0 |
| PRAD | TCGA-HC-8262-01A | TCGA-HC-8262 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 45 | 48 | 46 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18180 | NA | 0 |
| PRAD | TCGA-HC-A48F-01A | TCGA-HC-A48F | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 16 | 17 | 13 | 2 | 42879877 | 39817544 | tier1 | 5UTR-CDS | 18181 | NA | 0 |
| PRAD | TCGA-HC-A632-01A | TCGA-HC-A632 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 29 | 27 | 21 | 2 | 42870046 | 39956869 | tier1 | CDS-5UTR | 18182 | NA | 0 |
| PRAD | TCGA-HC-A6HY-01A | TCGA-HC-A6HY | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 18 | 11 | 11 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18183 | NA | 0 |
| PRAD | TCGA-HC-A76X-01A | TCGA-HC-A76X | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 165 | 157 | 142 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18184 | NA | 0 |
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