Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| PRAD | TCGA-G9-6342-01A | TCGA-G9-6342 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 70 | 22 | 21 | 2 | 42880008 | 39795483 | tier1 | 5UTR-CDS | 18145 | NA | 0 |
| PRAD | TCGA-G9-6351-01A | TCGA-G9-6351 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 10 | 4 | 4 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18146 | NA | 0 |
| PRAD | TCGA-G9-6353-01A | TCGA-G9-6353 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 10 | 10 | 7 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18147 | NA | 0 |
| PRAD | TCGA-G9-6354-01A | TCGA-G9-6354 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 25 | 28 | 24 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18148 | NA | 0 |
| PRAD | TCGA-G9-6356-01A | TCGA-G9-6356 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 4 | 1 | 1 | 2 | 42880008 | 39817544 | tier4 | 5UTR-CDS | 18149 | NA | 0 |
| PRAD | TCGA-G9-6361-01A | TCGA-G9-6361 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 12 | 13 | 13 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18150 | NA | 0 |
| PRAD | TCGA-G9-6362-01A | TCGA-G9-6362 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 4 | 5 | 5 | 2 | 42880008 | 39817544 | tier2 | 5UTR-CDS | 18151 | NA | 0 |
| PRAD | TCGA-G9-6363-01A | TCGA-G9-6363 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 4 | 5 | 4 | 2 | 42879877 | 39817544 | tier1 | 5UTR-CDS | 18152 | NA | 0 |
| PRAD | TCGA-G9-6364-01A | TCGA-G9-6364 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 4 | 1 | 1 | 2 | 42880008 | 39817544 | tier2 | 5UTR-CDS | 18153 | NA | 0 |
| PRAD | TCGA-G9-6365-01A | TCGA-G9-6365 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 16 | 16 | 16 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18154 | validated | 0 |
| PRAD | TCGA-G9-6373-01A | TCGA-G9-6373 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 5 | 3 | 2 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18155 | NA | 0 |
| PRAD | TCGA-G9-6377-01A | TCGA-G9-6377 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 12 | 7 | 6 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18156 | NA | 0 |
| PRAD | TCGA-G9-6384-01A | TCGA-G9-6384 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 43 | 16 | 15 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18157 | NA | 0 |
| PRAD | TCGA-G9-6385-01A | TCGA-G9-6385 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 4 | 2 | 2 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18158 | NA | 0 |
| PRAD | TCGA-G9-7509-01A | TCGA-G9-7509 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 17 | 18 | 5 | 2 | 42880008 | 39956869 | tier1 | 5UTR-5UTR | 18159 | NA | 0 |
| PRAD | TCGA-G9-7525-01A | TCGA-G9-7525 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 7 | 7 | 7 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18160 | NA | 0 |
| PRAD | TCGA-G9-A9S4-01A | TCGA-G9-A9S4 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 20 | 13 | 11 | 2 | 42878372 | 39817544 | tier1 | NA | 18161 | NA | 0 |
| PRAD | TCGA-G9-A9S7-01A | TCGA-G9-A9S7 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 80 | 63 | 57 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18162 | NA | 0 |
| PRAD | TCGA-H9-A6BY-01A | TCGA-H9-A6BY | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 25 | 39 | 35 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18163 | NA | 0 |
| PRAD | TCGA-HC-7077-01A | TCGA-HC-7077 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 18 | 5 | 5 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18164 | NA | 0 |
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