Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| PRAD | TCGA-EJ-7321-01A | TCGA-EJ-7321 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 29 | 40 | 40 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18125 | NA | 0 |
| PRAD | TCGA-EJ-7325-01B | TCGA-EJ-7325 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 28 | 22 | 21 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18126 | NA | 0 |
| PRAD | TCGA-EJ-7327-01A | TCGA-EJ-7327 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 148 | 115 | 92 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18127 | NA | 0 |
| PRAD | TCGA-EJ-7328-01A | TCGA-EJ-7328 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 13 | 7 | 7 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18128 | NA | 0 |
| PRAD | TCGA-EJ-7783-01A | TCGA-EJ-7783 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 30 | 14 | 11 | 2 | 42879877 | 39817544 | tier1 | 5UTR-CDS | 18129 | NA | 0 |
| PRAD | TCGA-EJ-7784-01A | TCGA-EJ-7784 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 65 | 65 | 57 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18130 | NA | 0 |
| PRAD | TCGA-EJ-7785-01A | TCGA-EJ-7785 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 47 | 24 | 14 | 2 | 42878372 | 39795483 | tier2 | NA | 18131 | NA | 0 |
| PRAD | TCGA-EJ-7793-01A | TCGA-EJ-7793 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 43 | 51 | 50 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18132 | NA | 0 |
| PRAD | TCGA-EJ-7797-01A | TCGA-EJ-7797 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 37 | 25 | 25 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18133 | NA | 0 |
| PRAD | TCGA-EJ-8469-01A | TCGA-EJ-8469 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 55 | 52 | 49 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18134 | NA | 0 |
| PRAD | TCGA-EJ-8472-01A | TCGA-EJ-8472 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 32 | 12 | 11 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18135 | NA | 0 |
| PRAD | TCGA-EJ-A46D-01A | TCGA-EJ-A46D | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 15 | 12 | 12 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18136 | NA | 0 |
| PRAD | TCGA-EJ-A46F-01A | TCGA-EJ-A46F | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 9 | 17 | 16 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18137 | NA | 0 |
| PRAD | TCGA-EJ-A65D-01A | TCGA-EJ-A65D | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 11 | 7 | 7 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18138 | NA | 0 |
| PRAD | TCGA-EJ-A65F-01A | TCGA-EJ-A65F | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 21 | 17 | 15 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18139 | NA | 0 |
| PRAD | TCGA-EJ-A7NF-01A | TCGA-EJ-A7NF | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 9 | 13 | 12 | 2 | 42880008 | 39817544 | tier4 | 5UTR-CDS | 18140 | NA | 0 |
| PRAD | TCGA-EJ-A8FO-01A | TCGA-EJ-A8FO | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 87 | 62 | 61 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18141 | NA | 0 |
| PRAD | TCGA-FC-7708-01A | TCGA-FC-7708 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 32 | 55 | 48 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18142 | NA | 0 |
| PRAD | TCGA-G9-6329-01A | TCGA-G9-6329 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 384 | 334 | 292 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18143 | NA | 0 |
| PRAD | TCGA-G9-6332-01A | TCGA-G9-6332 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 153 | 124 | 116 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18144 | NA | 0 |
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