Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| PRAD | TCGA-EJ-5495-01A | TCGA-EJ-5495 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 21 | 9 | 9 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18105 | NA | 0 |
| PRAD | TCGA-EJ-5496-01A | TCGA-EJ-5496 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 21 | 22 | 18 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18106 | NA | 0 |
| PRAD | TCGA-EJ-5497-01A | TCGA-EJ-5497 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 47 | 42 | 41 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18107 | NA | 0 |
| PRAD | TCGA-EJ-5498-01A | TCGA-EJ-5498 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 8 | 4 | 2 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18108 | NA | 0 |
| PRAD | TCGA-EJ-5499-01A | TCGA-EJ-5499 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 61 | 72 | 71 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18109 | NA | 0 |
| PRAD | TCGA-EJ-5502-01A | TCGA-EJ-5502 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 231 | 144 | 128 | 2 | 42860321 | 39817544 | tier2 | Out-of-frame | 18110 | NA | 0 |
| PRAD | TCGA-EJ-5506-01A | TCGA-EJ-5506 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 7 | 11 | 10 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18111 | NA | 0 |
| PRAD | TCGA-EJ-5507-01A | TCGA-EJ-5507 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 18 | 13 | 10 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18112 | NA | 0 |
| PRAD | TCGA-EJ-5508-01A | TCGA-EJ-5508 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 9 | 4 | 4 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18113 | NA | 0 |
| PRAD | TCGA-EJ-5512-01A | TCGA-EJ-5512 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 7 | 5 | 5 | 2 | 42878372 | 39817544 | tier1 | NA | 18114 | NA | 0 |
| PRAD | TCGA-EJ-5516-01A | TCGA-EJ-5516 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 20 | 19 | 16 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18115 | NA | 0 |
| PRAD | TCGA-EJ-5521-01A | TCGA-EJ-5521 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 103 | 73 | 65 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18116 | NA | 0 |
| PRAD | TCGA-EJ-5522-01A | TCGA-EJ-5522 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 24 | 22 | 20 | 2 | 42880008 | 39956869 | tier1 | 5UTR-5UTR | 18117 | NA | 0 |
| PRAD | TCGA-EJ-5524-01A | TCGA-EJ-5524 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 34 | 15 | 14 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18118 | NA | 0 |
| PRAD | TCGA-EJ-5525-01A | TCGA-EJ-5525 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 49 | 42 | 42 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18119 | NA | 0 |
| PRAD | TCGA-EJ-5526-01A | TCGA-EJ-5526 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 144 | 70 | 65 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18120 | NA | 0 |
| PRAD | TCGA-EJ-5527-01A | TCGA-EJ-5527 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 10 | 21 | 20 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18121 | NA | 0 |
| PRAD | TCGA-EJ-5530-01A | TCGA-EJ-5530 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 172 | 111 | 103 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18122 | NA | 0 |
| PRAD | TCGA-EJ-5542-01A | TCGA-EJ-5542 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 8 | 13 | 12 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18123 | NA | 0 |
| PRAD | TCGA-EJ-7315-01A | TCGA-EJ-7315 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 48 | 47 | 44 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18124 | NA | 0 |
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