Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| PRAD | TCGA-KK-A59Y-01A | TCGA-KK-A59Y | TMPRSS2|TMEFF2 | TMPRSS2 | TMEFF2 | 21 | 2 | -1 | -1 | 48 | 29 | 29 | 4.7 | 42852403 | 192863934 | tier1 | In-frame | 18286 | NA | 0 |
| PRAD | TCGA-2A-A8VL-01A | TCGA-2A-A8VL | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 29 | 18 | 14 | 2 | 42866283 | 39817544 | tier1 | Out-of-frame | 18086 | NA | 0 |
| PRAD | TCGA-2A-A8VT-01A | TCGA-2A-A8VT | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 82 | 38 | 37 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18087 | NA | 0 |
| PRAD | TCGA-2A-A8VV-01A | TCGA-2A-A8VV | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 47 | 48 | 45 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18088 | NA | 0 |
| PRAD | TCGA-2A-AAYU-01A | TCGA-2A-AAYU | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 644 | 268 | 237 | 2 | 42866283 | 39817544 | tier1 | Out-of-frame | 18089 | NA | 0 |
| PRAD | TCGA-4L-AA1F-01A | TCGA-4L-AA1F | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 50 | 51 | 47 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18090 | NA | 0 |
| PRAD | TCGA-CH-5739-01A | TCGA-CH-5739 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 30 | 17 | 16 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18091 | NA | 0 |
| PRAD | TCGA-CH-5740-01A | TCGA-CH-5740 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 45 | 47 | 42 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18092 | NA | 0 |
| PRAD | TCGA-CH-5741-01A | TCGA-CH-5741 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 159 | 171 | 169 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18093 | NA | 0 |
| PRAD | TCGA-CH-5743-01A | TCGA-CH-5743 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 3 | 1 | 1 | 2 | 42870046 | 39817544 | tier3 | In-frame | 18094 | NA | 0 |
| PRAD | TCGA-CH-5746-01A | TCGA-CH-5746 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 15 | 10 | 7 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18095 | NA | 0 |
| PRAD | TCGA-CH-5752-01A | TCGA-CH-5752 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 70 | 76 | 68 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18096 | NA | 0 |
| PRAD | TCGA-CH-5764-01A | TCGA-CH-5764 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 9 | 5 | 4 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18097 | NA | 0 |
| PRAD | TCGA-CH-5765-01A | TCGA-CH-5765 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 13 | 31 | 27 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18098 | NA | 0 |
| PRAD | TCGA-CH-5768-01A | TCGA-CH-5768 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 18 | 11 | 10 | 2 | 42880008 | 39956869 | tier1 | 5UTR-5UTR | 18099 | NA | 0 |
| PRAD | TCGA-CH-5769-01A | TCGA-CH-5769 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 43 | 32 | 28 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18100 | NA | 0 |
| PRAD | TCGA-CH-5789-01A | TCGA-CH-5789 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 59 | 29 | 29 | 2 | 42866283 | 39817544 | tier1 | Out-of-frame | 18101 | NA | 0 |
| PRAD | TCGA-CH-5790-01A | TCGA-CH-5790 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 31 | 19 | 17 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18102 | NA | 0 |
| PRAD | TCGA-CH-5791-01A | TCGA-CH-5791 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 16 | 17 | 16 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18103 | NA | 0 |
| PRAD | TCGA-CH-5794-01A | TCGA-CH-5794 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 47 | 25 | 24 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18104 | NA | 0 |
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