Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
| Showing page 273 |
first page | previous page | next page | last page |
| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| HNSC | TCGA-DQ-7589-01A | TCGA-DQ-7589 | MTA1|PACS2 | MTA1 | PACS2 | 14 | 14 | 1 | 1 | 4 | 2 | 2 | 0.19 | 105886400 | 105860891 | tier1 | In-frame | 10761 | NA | 0.37871 |
| LUSC | TCGA-34-5240-01A | TCGA-34-5240 | MTA1|PACS2 | MTA1 | PACS2 | 14 | 14 | 1 | 1 | 2 | 3 | 3 | 0.19 | 105929888 | 105843105 | tier2 | Out-of-frame | 10759 | validated | 0.37871 |
| CHOL | TCGA-W5-AA31-01A | TCGA-W5-AA31 | SPNS2|PSMD11 | SPNS2 | PSMD11 | 17 | 17 | 1 | 1 | 48 | 41 | 41 | 1.6 | 4428488 | 30804539 | tier1 | In-frame | 16737 | NA | 0 |
| SARC | TCGA-HB-A43Z-01A | TCGA-HB-A43Z | SLC8A1|SRSF7 | SLC8A1 | SRSF7 | 2 | 2 | -1 | -1 | 8 | 5 | 5 | 1.9 | 40655613 | 38977336 | tier1 | Out-of-frame | 16296 | non-validated | 0 |
| BLCA | TCGA-C4-A0F7-01A | TCGA-C4-A0F7 | SLC25A21|MIPOL1 | SLC25A21 | MIPOL1 | 14 | 14 | -1 | 1 | 13 | 1 | 1 | 0.2 | 37641486 | 37681435 | tier3 | CDS-5UTR | 16098 | validated | 0 |
| LUAD | TCGA-78-7161-01A | TCGA-78-7161 | SLC25A21|MIPOL1 | SLC25A21 | MIPOL1 | 14 | 14 | -1 | 1 | 3 | 2 | 2 | 0.2 | 37194775 | 37892060 | tier1 | In-frame | 16097 | NA | 0 |
| SKCM | TCGA-WE-A8ZX-06A | TCGA-WE-A8ZX | SLC25A21|RP11-944C7.1 | SLC25A21 | RP11-944C7.1 | 14 | 14 | -1 | -1 | 9 | 3 | 2 | 0.04 | 37641486 | 90095480 | tier1 | NA | 16099 | NA | 0 |
| BRCA | TCGA-AR-A0TX-01A | TCGA-AR-A0TX | ABAT|C16orf62 | ABAT | C16orf62 | 16 | 16 | 1 | 1 | 67 | 20 | 20 | 0.2 | 8768568 | 19663298 | tier1 | 5UTR-CDS | 32 | non-validated | 0 |
| LGG | TCGA-CS-5397-01A | TCGA-CS-5397 | ABAT|KIAA0430 | ABAT | KIAA0430 | 16 | 16 | 1 | -1 | 9 | 4 | 3 | 5.4 | 8768568 | 15706634 | tier1 | 5UTR-CDS | 33 | NA | 0.33735 |
| BRCA | TCGA-D8-A1JK-01A | TCGA-D8-A1JK | CAMK1D|C10orf47 | CAMK1D | C10orf47 | 10 | 10 | 1 | 1 | 6 | 3 | 3 | 0.023 | 12391909 | 11893996 | tier1 | CDS-5UTR | 2917 | NA | 0 |
| BRCA | TCGA-OL-A6VO-01A | TCGA-OL-A6VO | CAMK1D|FAM188A | CAMK1D | FAM188A | 10 | 10 | 1 | -1 | 15 | 6 | 3 | 2.5 | 12708809 | 15824225 | tier1 | Out-of-frame | 2918 | NA | 0.36116 |
| BRCA | TCGA-A8-A09D-01A | TCGA-A8-A09D | CAMK1D|TSPAN18 | CAMK1D | TSPAN18 | 10 | 11 | 1 | 1 | 11 | 5 | 5 | 0.35 | 12856306 | 44785976 | tier1 | CDS-5UTR | 2919 | NA | 0.36371 |
| LUAD | TCGA-O1-A52J-01A | TCGA-O1-A52J | GAS6|GPC5 | GAS6 | GPC5 | 13 | 13 | -1 | 1 | 5 | 2 | 2 | 0.94 | 114566548 | 93518535 | tier1 | Out-of-frame | 6962 | NA | 0.37609 |
| CHOL | TCGA-W5-AA2Q-01A | TCGA-W5-AA2Q | GPC6|GPC5 | GPC6 | GPC5 | 13 | 13 | 1 | 1 | 5 | 4 | 4 | 3.3 | 93879869 | 92797083 | tier1 | Out-of-frame | 7334 | NA | 0.34681 |
| HNSC | TCGA-CQ-6224-01A | TCGA-CQ-6224 | GPC6|GPC5 | GPC6 | GPC5 | 13 | 13 | 1 | 1 | 9 | 4 | 4 | 3.3 | 93879869 | 93518535 | tier1 | In-frame | 7330 | NA | 0.34681 |
| KIRC | TCGA-B0-4706-01A | TCGA-B0-4706 | GPC6|GPC5 | GPC6 | GPC5 | 13 | 13 | 1 | 1 | 10 | 11 | 11 | 3.3 | 93879869 | 93518535 | tier1 | In-frame | 7328 | NA | 0.34681 |
| LIHC | TCGA-CC-A3M9-01A | TCGA-CC-A3M9 | GPC6|GPC5 | GPC6 | GPC5 | 13 | 13 | 1 | 1 | 30 | 16 | 16 | 3.3 | 93879869 | 93518535 | tier1 | In-frame | 7329 | NA | 0.34681 |
| LIHC | TCGA-MI-A75E-01A | TCGA-MI-A75E | GPC6|GPC5 | GPC6 | GPC5 | 13 | 13 | 1 | 1 | 20 | 5 | 5 | 3.3 | 93879869 | 93518535 | tier1 | In-frame | 7332 | NA | 0.34681 |
| PRAD | TCGA-HC-A76W-01A | TCGA-HC-A76W | GPC6|GPC5 | GPC6 | GPC5 | 13 | 13 | 1 | 1 | 4 | 2 | 1 | 3.3 | 93879869 | 93518535 | tier3 | In-frame | 7331 | NA | 0.34681 |
| UCS | TCGA-N5-A59E-01A | TCGA-N5-A59E | GPC6|GPC5 | GPC6 | GPC5 | 13 | 13 | 1 | 1 | 2 | 9 | 7 | 3.3 | 94482798 | 93518535 | tier3 | Out-of-frame | 7333 | NA | 0.34681 |
|
Showing page 273 |
first page | previous page | next page | last page |
Copyright © 2020 University of Pennsylvania. All Rights Reserved.