Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-E2-A1L9-01A | TCGA-E2-A1L9 | BGN|ZNF827 | BGN | ZNF827 | X | 4 | 1 | -1 | 2 | 89 | 62 | 0.18 | 152775004 | 146859787 | tier3 | 3UTR-5UTR | 2086 | NA | 0.36706 |
| LUAD | TCGA-44-6774-01A | TCGA-44-6774 | BGN|UTRN | BGN | UTRN | X | 6 | 1 | 1 | 2 | 50 | 46 | 0.087 | 152775004 | 144665237 | tier3 | NA | 2085 | NA | 0.37406 |
| SARC | TCGA-LI-A67I-01A | TCGA-LI-A67I | BGN|SEC63 | BGN | SEC63 | X | 6 | 1 | -1 | 2 | 15 | 12 | 0.16 | 152775004 | 108214782 | tier3 | NA | 2082 | NA | 0.36514 |
| SARC | TCGA-PC-A5DN-01A | TCGA-PC-A5DN | BGN|ZNFX1 | BGN | ZNFX1 | X | 20 | 1 | -1 | 2 | 87 | 75 | 0.18 | 152775004 | 47863418 | tier4 | 3UTR-CDS | 2087 | NA | 0.3632 |
| SKCM | TCGA-EE-A2A5-06A | TCGA-EE-A2A5 | BGN|RABEP1 | BGN | RABEP1 | X | 17 | 1 | 1 | 2 | 24 | 22 | 1.6 | 152775004 | 5283828 | tier4 | NA | 2081 | NA | 0.36997 |
| BLCA | TCGA-DK-A3IN-01A | TCGA-DK-A3IN | LIMK2|CDC45 | LIMK2 | CDC45 | 22 | 22 | 1 | 1 | 37 | 49 | 44 | 3.3 | 31664186 | 19504050 | tier1 | In-frame | 9350 | NA | 0.37584 |
| BRCA | TCGA-A7-A13D-01A | TCGA-A7-A13D | LIMK2|OSBP2 | LIMK2 | OSBP2 | 22 | 22 | 1 | 1 | 3 | 13 | 4 | 0.16 | 31621805 | 31266416 | tier1 | Out-of-frame | 9352 | validated | 0.37897 |
| BRCA | TCGA-A8-A07O-01A | TCGA-A8-A07O | LIMK2|RUFY1 | LIMK2 | RUFY1 | 22 | 5 | 1 | 1 | 6 | 9 | 9 | 1.3 | 31621805 | 179007948 | tier1 | In-frame | 9353 | NA | 0.38048 |
| HNSC | TCGA-CV-6941-01A | TCGA-CV-6941 | LIMK2|ATXN10 | LIMK2 | ATXN10 | 22 | 22 | 1 | 1 | 15 | 8 | 7 | 1.5 | 31654412 | 46202839 | tier1 | In-frame | 9349 | NA | 0.37759 |
| THYM | TCGA-XM-A8R9-01A | TCGA-XM-A8R9 | LIMK2|MED15 | LIMK2 | MED15 | 22 | 22 | 1 | 1 | 6 | 7 | 6 | 0.036 | 31621805 | 20891404 | tier1 | In-frame | 9351 | NA | 0.37911 |
| HNSC | TCGA-CN-4730-01A | TCGA-CN-4730 | RNASE10|CD38 | RNASE10 | CD38 | 14 | 4 | 1 | 1 | 2 | 2 | 2 | 0.95 | 20974178 | 15818134 | tier3 | Out-of-frame | 14717 | NA | 0 |
| HNSC | TCGA-CN-4731-01A | TCGA-CN-4731 | RNASE10|CD38 | RNASE10 | CD38 | 14 | 4 | 1 | 1 | 2 | 1 | 1 | 0.95 | 20974178 | 15818134 | tier2 | Out-of-frame | 14718 | NA | 0 |
| HNSC | TCGA-CN-5369-01A | TCGA-CN-5369 | RNASE10|CD38 | RNASE10 | CD38 | 14 | 4 | 1 | 1 | 2 | 1 | 1 | 0.95 | 20974178 | 15818134 | tier3 | Out-of-frame | 14719 | NA | 0 |
| LUSC | TCGA-56-5898-01A | TCGA-56-5898 | RNASE10|CD38 | RNASE10 | CD38 | 14 | 4 | 1 | 1 | 2 | 2 | 2 | 0.95 | 20974178 | 15818134 | tier3 | Out-of-frame | 14716 | NA | 0 |
| CESC | TCGA-C5-A7UH-01A | TCGA-C5-A7UH | EPHB3|P2RY12 | EPHB3 | P2RY12 | 3 | 3 | 1 | -1 | 3 | 2 | 2 | 0.27 | 184280141 | 151058548 | tier1 | CDS-5UTR | 5679 | NA | 0.38094 |
| SARC | TCGA-DX-A23R-01A | TCGA-DX-A23R | EPHB3|PAX2 | EPHB3 | PAX2 | 3 | 10 | 1 | 1 | 9 | 5 | 4 | 0.004 | 184290964 | 102566187 | tier1 | In-frame | 5680 | non-validated | 0.38543 |
| ACC | TCGA-OU-A5PI-01A | TCGA-OU-A5PI | PLCB1|WTIP | PLCB1 | WTIP | 20 | 19 | 1 | 1 | 6 | 2 | 2 | 0.75 | 8737825 | 34981281 | tier1 | In-frame | 12960 | NA | 0.38058 |
| BRCA | TCGA-BH-A203-01A | TCGA-BH-A203 | PLCB1|GPCPD1 | PLCB1 | GPCPD1 | 20 | 20 | 1 | -1 | 6 | 3 | 3 | 0.003 | 8131018 | 5585086 | tier1 | CDS-5UTR | 12957 | NA | 0.37622 |
| LUSC | TCGA-22-A5C4-01A | TCGA-22-A5C4 | PLCB1|MCM8 | PLCB1 | MCM8 | 20 | 20 | 1 | 1 | 27 | 19 | 17 | 0.97 | 8703068 | 5937772 | tier1 | In-frame | 12958 | NA | 0.38483 |
| LUSC | TCGA-22-A5C4-01A | TCGA-22-A5C4 | PLCB1|RBL1 | PLCB1 | RBL1 | 20 | 20 | 1 | -1 | 10 | 11 | 10 | 0.12 | 8131018 | 35651229 | tier1 | In-frame | 12959 | NA | 0.38466 |
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