Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUAD | TCGA-55-A48Y-01A | TCGA-55-A48Y | SETD2|QRICH1 | SETD2 | QRICH1 | 3 | 3 | -1 | -1 | 23 | 32 | 30 | 0.31 | 47205344 | 49070661 | tier1 | Out-of-frame | 15694 | NA | 0 |
| MESO | TCGA-SC-A6LM-01A | TCGA-SC-A6LM | SETD2|MACROD2 | SETD2 | MACROD2 | 3 | 20 | -1 | 1 | 2 | 6 | 6 | 0.43 | 47125210 | 14066267 | tier2 | Out-of-frame | 15690 | NA | 0 |
| MESO | TCGA-ZN-A9VW-01A | TCGA-ZN-A9VW | SETD2|SPATA12 | SETD2 | SPATA12 | 3 | 3 | -1 | 1 | 81 | 62 | 60 | 0.72 | 47155366 | 57107394 | tier1 | CDS-5UTR | 15698 | NA | 0 |
| SARC | TCGA-FX-A48G-01A | TCGA-FX-A48G | SETD2|RBM6 | SETD2 | RBM6 | 3 | 3 | -1 | 1 | 439 | 702 | 654 | 0.35 | 47205344 | 50112634 | tier1 | In-frame | 15695 | validated | 0 |
| STAD | TCGA-BR-A4CR-01A | TCGA-BR-A4CR | SETD2|SCAP | SETD2 | SCAP | 3 | 3 | -1 | -1 | 4 | 44 | 42 | 0.009 | 47139445 | 47484581 | tier1 | CDS-5UTR | 15696 | NA | 0 |
| UCS | TCGA-N9-A4PZ-01A | TCGA-N9-A4PZ | SETD2|KIF9 | SETD2 | KIF9 | 3 | 3 | -1 | -1 | 3 | 5 | 5 | 1 | 47205344 | 47289576 | tier1 | Out-of-frame | 15689 | NA | 0 |
| UCS | TCGA-N9-A4PZ-01A | TCGA-N9-A4PZ | SETD2|PALMD | SETD2 | PALMD | 3 | 1 | -1 | 1 | 59 | 79 | 64 | 0.75 | 47205344 | 100159575 | tier1 | Out-of-frame | 15692 | NA | 0 |
| LGG | TCGA-HW-A5KK-01A | TCGA-HW-A5KK | BAI1|EXT1 | BAI1 | EXT1 | 8 | 8 | 1 | -1 | 11 | 3 | 3 | 0.53 | 143592434 | 118834836 | tier1 | In-frame | 1911 | NA | 0.3686 |
| LUSC | TCGA-22-4604-01A | TCGA-22-4604 | SLC9A9|KCNAB1 | SLC9A9 | KCNAB1 | 3 | 3 | -1 | 1 | 4 | 4 | 4 | 0.043 | 143513843 | 156139405 | tier1 | In-frame | 16306 | NA | 0 |
| SKCM | TCGA-DA-A1HW-06A | TCGA-DA-A1HW | TNRC18|HDAC9 | TNRC18 | HDAC9 | 7 | 7 | -1 | 1 | 6 | 2 | 2 | 0.14 | 5401528 | 18535885 | tier1 | CDS-5UTR | 18374 | non-validated | 0 |
| BRCA | TCGA-A2-A0YT-01A | TCGA-A2-A0YT | TNRC18|RNF216 | TNRC18 | RNF216 | 7 | 7 | -1 | -1 | 30 | 39 | 38 | 0.17 | 5410006 | 5692141 | tier1 | Out-of-frame | 18377 | NA | 0 |
| BRCA | TCGA-AN-A0FJ-01A | TCGA-AN-A0FJ | TNRC18|RNF216 | TNRC18 | RNF216 | 7 | 7 | -1 | -1 | 6 | 4 | 4 | 0.17 | 5410006 | 5681007 | tier1 | Out-of-frame | 18379 | NA | 0 |
| BRCA | TCGA-BH-A0B2-01A | TCGA-BH-A0B2 | TNRC18|ZC3HAV1 | TNRC18 | ZC3HAV1 | 7 | 7 | -1 | -1 | 18 | 10 | 9 | 2.7 | 5463072 | 138768778 | tier1 | 5UTR-CDS | 18385 | NA | 0 |
| LGG | TCGA-HT-A617-01A | TCGA-HT-A617 | TNRC18|MKLN1 | TNRC18 | MKLN1 | 7 | 7 | -1 | 1 | 4 | 1 | 1 | 1.2 | 5460691 | 131060183 | tier3 | Out-of-frame | 18375 | NA | 0 |
| LUAD | TCGA-78-8660-01A | TCGA-78-8660 | TNRC18|RNF216 | TNRC18 | RNF216 | 7 | 7 | -1 | -1 | 25 | 12 | 12 | 0.17 | 5434071 | 5663756 | tier1 | Out-of-frame | 18376 | NA | 0 |
| LUAD | TCGA-MP-A4T9-01A | TCGA-MP-A4T9 | TNRC18|TGS1 | TNRC18 | TGS1 | 7 | 8 | -1 | 1 | 20 | 16 | 15 | 0.034 | 5410006 | 56723440 | tier1 | In-frame | 18383 | NA | 0 |
| SKCM | TCGA-FR-A729-06A | TCGA-FR-A729 | TNRC18|DGKB | TNRC18 | DGKB | 7 | 7 | -1 | -1 | 22 | 22 | 18 | 0.75 | 5434071 | 14217776 | tier1 | In-frame | 18373 | NA | 0 |
| SKCM | TCGA-FS-A1ZY-06A | TCGA-FS-A1ZY | TNRC18|TSGA13 | TNRC18 | TSGA13 | 7 | 7 | -1 | -1 | 17 | 20 | 15 | 0.063 | 5413686 | 130356628 | tier1 | Out-of-frame | 18384 | NA | 0 |
| STAD | TCGA-CD-8524-01A | TCGA-CD-8524 | TNRC18|RNF216 | TNRC18 | RNF216 | 7 | 7 | -1 | -1 | 10 | 70 | 54 | 0.17 | 5460691 | 5681007 | tier1 | Out-of-frame | 18382 | NA | 0 |
| UCEC | TCGA-A5-A2K4-01A | TCGA-A5-A2K4 | TNRC18|RNF216 | TNRC18 | RNF216 | 7 | 7 | -1 | -1 | 23 | 21 | 15 | 0.17 | 5460691 | 5681007 | tier1 | Out-of-frame | 18378 | NA | 0 |
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