Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUSC | TCGA-21-1071-01A | TCGA-21-1071 | SLC47A2|FADS2 | SLC47A2 | FADS2 | 17 | 11 | -1 | 1 | 4 | 5 | 5 | 0.29 | 19605918 | 61624483 | tier4 | In-frame | 16267 | NA | 0 |
| SARC | TCGA-PC-A5DL-01A | TCGA-PC-A5DL | SLC47A2|SPECC1 | SLC47A2 | SPECC1 | 17 | 17 | -1 | 1 | 4 | 3 | 3 | 2.3 | 19617138 | 20013740 | tier1 | Out-of-frame | 16268 | NA | 0 |
| BRCA | TCGA-E9-A229-01A | TCGA-E9-A229 | GPR157|GON4L | GPR157 | GON4L | 1 | 1 | -1 | -1 | 4 | 2 | 2 | 1.5 | 9188704 | 155755165 | tier1 | Out-of-frame | 7366 | NA | 0.35331 |
| SKCM | TCGA-ER-A19H-06A | TCGA-ER-A19H | SLC25A42|SMARCA4 | SLC25A42 | SMARCA4 | 19 | 19 | 1 | 1 | 2 | 6 | 4 | 0.65 | 19174924 | 11123625 | tier2 | 5UTR-CDS | 16115 | NA | 0 |
| HNSC | TCGA-CV-5443-01A | TCGA-CV-5443 | SLC26A11|OAF | SLC26A11 | OAF | 17 | 11 | 1 | 1 | 10 | 3 | 2 | 0.26 | 78211393 | 120099577 | tier1 | In-frame | 16120 | non-validated | 0 |
| BRCA | TCGA-A7-A6VY-01A | TCGA-A7-A6VY | EHMT1|GRIN1 | EHMT1 | GRIN1 | 9 | 9 | 1 | 1 | 3 | 2 | 2 | 0.27 | 140611634 | 140036465 | tier1 | In-frame | 5409 | NA | 0.3732 |
| PRAD | TCGA-EJ-A46G-01A | TCGA-EJ-A46G | EHMT1|GRIN1 | EHMT1 | GRIN1 | 9 | 9 | 1 | 1 | 35 | 16 | 14 | 0.27 | 140707982 | 140036465 | tier1 | In-frame | 5410 | NA | 0.3732 |
| BLCA | TCGA-H4-A2HO-01A | TCGA-H4-A2HO | EHMT1|LRRC68 | EHMT1 | LRRC68 | 9 | 19 | 1 | 1 | 17 | 19 | 16 | 0.013 | 140622981 | 45641772 | tier1 | In-frame | 5411 | NA | 0.35237 |
| BRCA | TCGA-PL-A8LZ-01A | TCGA-PL-A8LZ | EHMT1|ARRDC1 | EHMT1 | ARRDC1 | 9 | 9 | 1 | 1 | 2 | 53 | 49 | 0.082 | 140513501 | 140507348 | tier3 | Out-of-frame | 5407 | NA | 0.3532 |
| CESC | TCGA-C5-A7XC-01A | TCGA-C5-A7XC | EHMT1|GFI1B | EHMT1 | GFI1B | 9 | 9 | 1 | 1 | 2 | 19 | 17 | 0.44 | 140513501 | 135862046 | tier2 | CDS-5UTR | 5408 | NA | 0.36836 |
| BRCA | TCGA-D8-A1JL-01A | TCGA-D8-A1JL | NPM1|RAB4A | NPM1 | RAB4A | 5 | 1 | 1 | 1 | 181 | 229 | 221 | 0.18 | 170815010 | 229422233 | tier1 | In-frame | 11701 | NA | 0.38512 |
| PCPG | TCGA-WB-A819-01A | TCGA-WB-A819 | PENK|PLAT | PENK | PLAT | 8 | 8 | -1 | -1 | 2 | 8 | 5 | 0.11 | 57353513 | 42051245 | tier3 | NA | 12609 | NA | 0.37356 |
| PCPG | TCGA-SQ-A6I4-01A | TCGA-SQ-A6I4 | PENK|AC011333.1 | PENK | AC011333.1 | 8 | 5 | -1 | 1 | 2 | 54 | 28 | 1.3 | 57353513 | 173473096 | tier3 | NA | 12608 | NA | 0.33346 |
| HNSC | TCGA-P3-A6T5-01A | TCGA-P3-A6T5 | HEPHL1|GUCY1A2 | HEPHL1 | GUCY1A2 | 11 | 11 | 1 | -1 | 2 | 2 | 2 | 0.32 | 93797676 | 106856857 | tier2 | Out-of-frame | 7700 | NA | 0.35861 |
| MESO | TCGA-ZN-A9VO-01A | TCGA-ZN-A9VO | SETD2|NISCH | SETD2 | NISCH | 3 | 3 | -1 | 1 | 10 | 8 | 8 | 5.5 | 47125210 | 52504875 | tier1 | In-frame | 15691 | NA | 0 |
| SARC | TCGA-LI-A9QH-01A | TCGA-LI-A9QH | SETD2|CCRL2 | SETD2 | CCRL2 | 3 | 3 | -1 | 1 | 103 | 8 | 7 | 0.15 | 47139445 | 46449559 | tier1 | In-frame | 15687 | NA | 0 |
| LUAD | TCGA-50-5044-01A | TCGA-50-5044 | SETD2|POGLUT1 | SETD2 | POGLUT1 | 3 | 3 | -1 | 1 | 4 | 4 | 4 | 0.007 | 47139445 | 119207776 | tier1 | In-frame | 15693 | NA | 0 |
| BRCA | TCGA-A2-A3XY-01A | TCGA-A2-A3XY | SETD2|ULK4 | SETD2 | ULK4 | 3 | 3 | -1 | -1 | 7 | 6 | 4 | 0.4 | 47155366 | 41504744 | tier1 | Out-of-frame | 15699 | NA | 0 |
| STAD | TCGA-CG-4449-01A | TCGA-CG-4449 | SETD2|SMARCC1 | SETD2 | SMARCC1 | 3 | 3 | -1 | -1 | 5 | 3 | 3 | 0.16 | 47205344 | 47632327 | tier1 | Out-of-frame | 15697 | NA | 0 |
| LUAD | TCGA-86-8673-01A | TCGA-86-8673 | SETD2|KIF9 | SETD2 | KIF9 | 3 | 3 | -1 | -1 | 5 | 6 | 5 | 1 | 47205344 | 47289576 | tier2 | Out-of-frame | 15688 | NA | 0 |
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