Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-B6-A0RU-01A | TCGA-B6-A0RU | GBA|SCAMP3 | GBA | SCAMP3 | 1 | 1 | -1 | -1 | 51 | 22 | 20 | 0.011 | 155214297 | 155228745 | tier1 | 5UTR-CDS | 6995 | non-validated | 0.35669 |
| LUSC | TCGA-22-A5C4-01A | TCGA-22-A5C4 | IL17RA|SCARF2 | IL17RA | SCARF2 | 22 | 22 | 1 | -1 | 3 | 4 | 4 | 0.3 | 17566119 | 20784120 | tier1 | Out-of-frame | 8163 | NA | 0.3442 |
| LUSC | TCGA-33-4538-01A | TCGA-33-4538 | NAALADL2|ABCC5 | NAALADL2 | ABCC5 | 3 | 3 | 1 | -1 | 45 | 27 | 27 | 1 | 175345174 | 183643507 | tier1 | In-frame | 11048 | NA | 0.34659 |
| HNSC | TCGA-BB-4223-01A | TCGA-BB-4223 | NAALADL2|DRD3 | NAALADL2 | DRD3 | 3 | 3 | 1 | -1 | 2 | 1 | 1 | 1 | 175455187 | 113858543 | tier2 | In-frame | 11049 | NA | 0.37113 |
| BRCA | TCGA-D8-A27M-01A | TCGA-D8-A27M | NAALADL2|NLGN1 | NAALADL2 | NLGN1 | 3 | 3 | 1 | 1 | 8 | 7 | 7 | 0.42 | 174577240 | 173322069 | tier1 | CDS-5UTR | 11053 | NA | 0.35619 |
| PRAD | TCGA-YL-A8S8-01A | TCGA-YL-A8S8 | NAALADL2|NLGN1 | NAALADL2 | NLGN1 | 3 | 3 | 1 | 1 | 4 | 7 | 7 | 0.42 | 174577240 | 173993105 | tier1 | In-frame | 11054 | NA | 0.35619 |
| BRCA | TCGA-D8-A27N-01A | TCGA-D8-A27N | NAALADL2|FBXO45 | NAALADL2 | FBXO45 | 3 | 3 | 1 | 1 | 7 | 5 | 5 | 0.086 | 175189546 | 196304324 | tier1 | In-frame | 11050 | NA | 0.34347 |
| BRCA | TCGA-AO-A0JM-01A | TCGA-AO-A0JM | NAALADL2|PEX5L | NAALADL2 | PEX5L | 3 | 3 | 1 | -1 | 11 | 6 | 6 | 0.038 | 175189546 | 179537764 | tier1 | In-frame | 11055 | validated | 0.36303 |
| LGG | TCGA-TM-A84B-01A | TCGA-TM-A84B | NAALADL2|TIGIT | NAALADL2 | TIGIT | 3 | 3 | 1 | 1 | 8 | 4 | 4 | 0.65 | 174455536 | 114012847 | tier1 | NA | 11058 | NA | 0.33409 |
| LUSC | TCGA-56-7730-01A | TCGA-56-7730 | NAALADL2|MCCC1 | NAALADL2 | MCCC1 | 3 | 3 | 1 | -1 | 12 | 11 | 2 | 0.14 | 175345174 | 182755222 | tier1 | In-frame | 11051 | NA | 0.34311 |
| LUSC | TCGA-70-6722-01A | TCGA-70-6722 | NAALADL2|NCKAP5 | NAALADL2 | NCKAP5 | 3 | 2 | 1 | -1 | 7 | 2 | 2 | 1.3 | 175189546 | 133626547 | tier1 | In-frame | 11052 | NA | 0.32905 |
| LUSC | TCGA-56-1622-01A | TCGA-56-1622 | NAALADL2|SMC5 | NAALADL2 | SMC5 | 3 | 9 | 1 | 1 | 3 | 1 | 1 | 0.086 | 174577240 | 72959060 | tier3 | Out-of-frame | 11057 | non-validated | 0.33775 |
| PRAD | TCGA-EJ-7792-01A | TCGA-EJ-7792 | NAALADL2|RSRC1 | NAALADL2 | RSRC1 | 3 | 3 | 1 | 1 | 2 | 2 | 2 | 1.5 | 174577240 | 158015828 | tier3 | Out-of-frame | 11056 | NA | 0.36036 |
| SKCM | TCGA-DA-A1HW-06A | TCGA-DA-A1HW | NAALADL2|VPS13C | NAALADL2 | VPS13C | 3 | 15 | 1 | -1 | 2 | 5 | 5 | 0.68 | 174158822 | 62306191 | tier2 | NA | 11059 | non-validated | 0.3359 |
| BLCA | TCGA-BL-A0C8-01A | TCGA-BL-A0C8 | CD151|EPS8L2 | CD151 | EPS8L2 | 11 | 11 | 1 | 1 | 35 | 24 | 24 | 0.19 | 836843 | 710422 | tier1 | Out-of-frame | 3261 | validated | 0.36886 |
| BRCA | TCGA-D8-A27M-01A | TCGA-D8-A27M | CD151|EFCAB4A | CD151 | EFCAB4A | 11 | 11 | 1 | 1 | 333 | 223 | 171 | 0.032 | 837354 | 831224 | tier1 | In-frame | 3260 | NA | 0.35713 |
| MESO | TCGA-XT-AASU-01A | TCGA-XT-AASU | PVRL3|KCNMB3 | PVRL3 | KCNMB3 | 3 | 3 | 1 | -1 | 3 | 2 | 1 | 0.73 | 110866331 | 178968722 | tier2 | In-frame | 13976 | NA | 0 |
| BRCA | TCGA-AO-A03M-01B | TCGA-AO-A03M | KIAA0195|ICT1 | KIAA0195 | ICT1 | 17 | 17 | 1 | 1 | 4 | 4 | 4 | 0.59 | 73468010 | 73013173 | tier1 | In-frame | 8748 | NA | 0.33497 |
| BRCA | TCGA-JL-A3YW-01A | TCGA-JL-A3YW | KIAA0195|ICT1 | KIAA0195 | ICT1 | 17 | 17 | 1 | 1 | 5 | 50 | 46 | 0.59 | 73452832 | 73013173 | tier1 | 5UTR-CDS | 8749 | NA | 0.33497 |
| LUSC | TCGA-22-5485-01A | TCGA-22-5485 | KIAA0195|NUP85 | KIAA0195 | NUP85 | 17 | 17 | 1 | 1 | 11 | 3 | 3 | 0.037 | 73468010 | 73204622 | tier4 | In-frame | 8751 | non-validated | 0.35507 |
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