Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BLCA | TCGA-FD-A5BV-01A | TCGA-FD-A5BV | SCUBE2|LDHC | SCUBE2 | LDHC | 11 | 11 | -1 | 1 | 24 | 14 | 13 | 0.34 | 9090917 | 18451284 | tier1 | In-frame | 15443 | NA | 0 |
| KIRP | TCGA-BQ-5890-01A | TCGA-BQ-5890 | CLCF1|PPP1CA | CLCF1 | PPP1CA | 11 | 11 | -1 | -1 | 98 | 55 | 52 | 0.11 | 67140995 | 67168670 | tier1 | In-frame | 3759 | NA | 0.37511 |
| LUSC | TCGA-NC-A5HK-01A | TCGA-NC-A5HK | CLCF1|PPP1CA | CLCF1 | PPP1CA | 11 | 11 | -1 | -1 | 23 | 6 | 4 | 0.11 | 67140995 | 67168670 | tier1 | In-frame | 3760 | NA | 0.37511 |
| BRCA | TCGA-A2-A0CL-01A | TCGA-A2-A0CL | RPS6KB2|C10orf54 | RPS6KB2 | C10orf54 | 11 | 10 | 1 | -1 | 13 | 15 | 11 | 1 | 67196094 | 73515223 | tier1 | Out-of-frame | 15092 | NA | 0 |
| BLCA | TCGA-DK-A6AV-01A | TCGA-DK-A6AV | RPS6KB2|ST3GAL2 | RPS6KB2 | ST3GAL2 | 11 | 16 | 1 | -1 | 20 | 10 | 9 | 1.1 | 67197066 | 70422449 | tier1 | Out-of-frame | 15095 | NA | 0 |
| BRCA | TCGA-AN-A03Y-01A | TCGA-AN-A03Y | RPS6KB2|PAAF1 | RPS6KB2 | PAAF1 | 11 | 11 | 1 | 1 | 33 | 16 | 13 | 100 | 67196711 | 73627590 | tier1 | In-frame | 15093 | NA | 0 |
| HNSC | TCGA-F7-7848-01A | TCGA-F7-7848 | RPS6KB2|PCNXL3 | RPS6KB2 | PCNXL3 | 11 | 11 | 1 | 1 | 63 | 29 | 29 | 0.003 | 67196711 | 65385411 | tier2 | Out-of-frame | 15094 | NA | 0 |
| LGG | TCGA-DU-6402-01A | TCGA-DU-6402 | GPR156|EPB41L2 | GPR156 | EPB41L2 | 3 | 6 | -1 | -1 | 2 | 2 | 2 | 0.21 | 120003876 | 131277639 | tier2 | 5UTR-5UTR | 7365 | NA | 0.36934 |
| SARC | TCGA-3B-A9HS-01A | TCGA-3B-A9HS | SLC35E3|L3MBTL3 | SLC35E3 | L3MBTL3 | 12 | 6 | 1 | 1 | 23 | 15 | 13 | 0.23 | 69145970 | 130454597 | tier1 | Out-of-frame | 16161 | NA | 0 |
| GBM | TCGA-06-0138-01A | TCGA-06-0138 | SLC35E3|OS9 | SLC35E3 | OS9 | 12 | 12 | 1 | 1 | 27 | 44 | 42 | 0.48 | 69145970 | 58109543 | tier1 | In-frame | 16162 | NA | 0 |
| CESC | TCGA-VS-A958-01A | TCGA-VS-A958 | SFN|PLAT | SFN | PLAT | 1 | 8 | 1 | -1 | 2 | 16 | 14 | 0.44 | 27190947 | 42051245 | tier3 | NA | 15752 | NA | 0 |
| HNSC | TCGA-BA-6872-01A | TCGA-BA-6872 | SFN|TYK2 | SFN | TYK2 | 1 | 19 | 1 | -1 | 2 | 5 | 2 | 0.71 | 27190947 | 10491352 | tier3 | 3UTR-5UTR | 15753 | non-validated | 0 |
| CESC | TCGA-JW-A5VL-01A | TCGA-JW-A5VL | SFN|CCT5 | SFN | CCT5 | 1 | 5 | 1 | 1 | 2 | 18 | 13 | 0.6 | 27190947 | 10250033 | tier3 | 3UTR-5UTR | 15747 | NA | 0 |
| CESC | TCGA-C5-A1M8-01A | TCGA-C5-A1M8 | SFN|CLASP1 | SFN | CLASP1 | 1 | 2 | 1 | -1 | 2 | 1 | 1 | 1.3 | 27190947 | 122217701 | tier3 | 3UTR-CDS | 15748 | non-validated | 0 |
| HNSC | TCGA-D6-6517-01A | TCGA-D6-6517 | SFN|ELK3 | SFN | ELK3 | 1 | 12 | 1 | 1 | 2 | 33 | 26 | 100 | 27190947 | 96588323 | tier3 | 3UTR-5UTR | 15749 | NA | 0 |
| HNSC | TCGA-F7-A623-01A | TCGA-F7-A623 | SFN|ELK3 | SFN | ELK3 | 1 | 12 | 1 | 1 | 2 | 70 | 56 | 100 | 27190947 | 96588323 | tier3 | 3UTR-5UTR | 15750 | NA | 0 |
| HNSC | TCGA-CV-A6JM-01A | TCGA-CV-A6JM | SFN|HDLBP | SFN | HDLBP | 1 | 2 | 1 | -1 | 2 | 1 | 1 | 0.3 | 27190947 | 242194995 | tier3 | 3UTR-CDS | 15751 | NA | 0 |
| KIRC | TCGA-B4-5378-01A | TCGA-B4-5378 | A2M|FAR1 | A2M | FAR1 | 12 | 11 | -1 | 1 | 2 | 5 | 1 | 0.29 | 9220308 | 13744912 | tier3 | NA | 5 | NA | 0.36255 |
| LIHC | TCGA-DD-A39W-01A | TCGA-DD-A39W | A2M|CCT5 | A2M | CCT5 | 12 | 5 | -1 | 1 | 2 | 10 | 2 | 0.63 | 9220308 | 10250033 | tier3 | 3UTR-5UTR | 4 | NA | 0.37168 |
| LUAD | TCGA-97-7941-01A | TCGA-97-7941 | A2M|ARFGEF2 | A2M | ARFGEF2 | 12 | 20 | -1 | 1 | 2 | 14 | 7 | 0.13 | 9220308 | 47615777 | tier3 | 3UTR-CDS | 3 | NA | 0.3675 |
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