Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SKCM | TCGA-ER-A197-06A | TCGA-ER-A197 | CHD2|ACSBG1 | CHD2 | ACSBG1 | 15 | 15 | 1 | -1 | 60 | 77 | 73 | 0.18 | 93444529 | 78466181 | tier1 | Out-of-frame | 3614 | NA | 0.34903 |
| SKCM | TCGA-ER-A197-06A | TCGA-ER-A197 | CHD2|ZNF880 | CHD2 | ZNF880 | 15 | 19 | 1 | 1 | 2 | 5 | 5 | 2.7 | 93444529 | 52887102 | tier2 | Out-of-frame | 3617 | NA | 0.34543 |
| BRCA | TCGA-JL-A3YW-01A | TCGA-JL-A3YW | SULT1B1|CSN2 | SULT1B1 | CSN2 | 4 | 4 | -1 | -1 | 5 | 6 | 6 | 0.65 | 70596219 | 70825797 | tier1 | Out-of-frame | 17181 | NA | 0 |
| STAD | TCGA-BR-8687-01A | TCGA-BR-8687 | MUC13|SIAE | MUC13 | SIAE | 3 | 11 | -1 | -1 | 2 | 23 | 11 | 0.57 | 124624289 | 124543777 | tier3 | 3UTR-5UTR | 10855 | NA | 0.3528 |
| ESCA | TCGA-L5-A8NE-01A | TCGA-L5-A8NE | STAT5B|STAT3 | STAT5B | STAT3 | 17 | 17 | -1 | -1 | 3 | 8 | 7 | 0.002 | 40354358 | 40477079 | tier1 | Out-of-frame | 17021 | validated | 0 |
| ESCA | TCGA-L5-A4OX-01A | TCGA-L5-A4OX | STAT5B|NSRP1 | STAT5B | NSRP1 | 17 | 17 | -1 | 1 | 2 | 28 | 27 | 0.13 | 40428266 | 28499560 | tier2 | 5UTR-CDS | 17018 | NA | 0 |
| PRAD | TCGA-HC-A8D0-01A | TCGA-HC-A8D0 | STAT5B|PFAS | STAT5B | PFAS | 17 | 17 | -1 | 1 | 4 | 5 | 5 | 0.023 | 40362189 | 8166238 | tier1 | In-frame | 17020 | NA | 0 |
| SARC | TCGA-DX-A3M1-01A | TCGA-DX-A3M1 | STAT5B|ODZ4 | STAT5B | ODZ4 | 17 | 11 | -1 | -1 | 3 | 3 | 3 | 0.21 | 40368032 | 78926954 | tier1 | CDS-5UTR | 17019 | validated | 0 |
| LGG | TCGA-DB-5276-01A | TCGA-DB-5276 | CNP|NCALD | CNP | NCALD | 17 | 8 | 1 | -1 | 2 | 14 | 10 | 0.36 | 40127192 | 102813898 | tier3 | 3UTR-5UTR | 3940 | NA | 0.36736 |
| PRAD | TCGA-V1-A9O5-06A | TCGA-V1-A9O5 | TDRD12|TEAD2 | TDRD12 | TEAD2 | 19 | 19 | 1 | -1 | 45 | 28 | 27 | 0.095 | 33268135 | 49854622 | tier1 | In-frame | 17620 | NA | 0 |
| BRCA | TCGA-AQ-A0Y5-01A | TCGA-AQ-A0Y5 | PHOSPHO1|KRT23 | PHOSPHO1 | KRT23 | 17 | 17 | -1 | -1 | 61 | 32 | 28 | 1.9 | 47304009 | 39086348 | tier1 | Out-of-frame | 12761 | NA | 0.3472 |
| LUAD | TCGA-44-4112-01A | TCGA-44-4112 | GPR160|SEC62 | GPR160 | SEC62 | 3 | 3 | 1 | 1 | 11 | 5 | 1 | 0.14 | 169797685 | 169693396 | tier4 | 5UTR-CDS | 7370 | non-validated | 0.34769 |
| PRAD | TCGA-VP-A876-01A | TCGA-VP-A876 | GPR160|PDCD10 | GPR160 | PDCD10 | 3 | 3 | 1 | -1 | 9 | 7 | 5 | 0.52 | 169756831 | 167405104 | tier1 | 5UTR-CDS | 7369 | NA | 0.35865 |
| LIHC | TCGA-DD-A115-01A | TCGA-DD-A115 | SLC25A30|CCDC107 | SLC25A30 | CCDC107 | 13 | 9 | -1 | 1 | 4 | 10 | 10 | 0.17 | 45985497 | 35658573 | tier1 | In-frame | 16108 | NA | 0 |
| SKCM | TCGA-D3-A8GB-06A | TCGA-D3-A8GB | CTSF|RANBP3 | CTSF | RANBP3 | 11 | 19 | -1 | -1 | 13 | 37 | 33 | 0.25 | 66335745 | 5921332 | tier1 | In-frame | 4404 | NA | 0.36133 |
| SARC | TCGA-3B-A9HL-01A | TCGA-3B-A9HL | ATP2A2|COL2A1 | ATP2A2 | COL2A1 | 12 | 12 | 1 | -1 | 5 | 6 | 5 | 1.5 | 110771948 | 48378382 | tier1 | In-frame | 1705 | NA | 0.38054 |
| LIHC | TCGA-BC-A10R-01A | TCGA-BC-A10R | ATP2A2|IFT81 | ATP2A2 | IFT81 | 12 | 12 | 1 | 1 | 3 | 4 | 3 | 0.26 | 110734542 | 110584758 | tier1 | Out-of-frame | 1710 | NA | 0.37729 |
| LUAD | TCGA-44-6779-01A | TCGA-44-6779 | ATP2A2|C12orf49 | ATP2A2 | C12orf49 | 12 | 12 | 1 | -1 | 3 | 2 | 1 | 0.24 | 110734542 | 117161028 | tier2 | Out-of-frame | 1704 | NA | 0 |
| LUAD | TCGA-49-6742-01A | TCGA-49-6742 | ATP2A2|IFT81 | ATP2A2 | IFT81 | 12 | 12 | 1 | 1 | 11 | 2 | 2 | 0.26 | 110734542 | 110600724 | tier1 | Out-of-frame | 1707 | validated | 0.37729 |
| LUAD | TCGA-78-7161-01A | TCGA-78-7161 | ATP2A2|IFT81 | ATP2A2 | IFT81 | 12 | 12 | 1 | 1 | 150 | 96 | 90 | 0.26 | 110720600 | 110628725 | tier2 | In-frame | 1708 | NA | 0.37729 |
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