Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUAD | TCGA-44-4112-01A | TCGA-44-4112 | KDM2A|RHOD | KDM2A | RHOD | 11 | 11 | 1 | 1 | 3 | 3 | 3 | 0.26 | 66888829 | 66833367 | tier1 | In-frame | 8638 | non-validated | 0.37063 |
| LUSC | TCGA-43-2578-01A | TCGA-43-2578 | KDM2A|C11orf80 | KDM2A | C11orf80 | 11 | 11 | 1 | 1 | 11 | 9 | 9 | 0.54 | 66888829 | 66605841 | tier1 | In-frame | 8626 | NA | 0 |
| LUSC | TCGA-33-6737-01A | TCGA-33-6737 | KDM2A|RHOD | KDM2A | RHOD | 11 | 11 | 1 | 1 | 249 | 214 | 198 | 0.26 | 66888829 | 66833367 | tier1 | In-frame | 8637 | NA | 0.37063 |
| PRAD | TCGA-EJ-A46G-01A | TCGA-EJ-A46G | KDM2A|C11orf80 | KDM2A | C11orf80 | 11 | 11 | 1 | 1 | 166 | 163 | 153 | 0.54 | 66888829 | 66555631 | tier1 | Out-of-frame | 8628 | NA | 0 |
| STAD | TCGA-BR-8289-01A | TCGA-BR-8289 | KDM2A|SYT12 | KDM2A | SYT12 | 11 | 11 | 1 | 1 | 21 | 114 | 103 | 0.3 | 66888829 | 66797593 | tier1 | CDS-5UTR | 8646 | NA | 0.34048 |
| UCEC | TCGA-AP-A5FX-01A | TCGA-AP-A5FX | KDM2A|RHOD | KDM2A | RHOD | 11 | 11 | 1 | 1 | 44 | 39 | 36 | 0.26 | 66888829 | 66833367 | tier1 | In-frame | 8639 | NA | 0.37063 |
| LUSC | TCGA-NC-A5HJ-01A | TCGA-NC-A5HJ | ADCK5|HEATR7A | ADCK5 | HEATR7A | 8 | 8 | 1 | 1 | 2 | 1 | 1 | 0.1 | 145617066 | 145267897 | tier3 | Out-of-frame | 467 | NA | 0.34362 |
| SKCM | TCGA-ER-A19W-06A | TCGA-ER-A19W | ADCK5|HSF1 | ADCK5 | HSF1 | 8 | 8 | 1 | 1 | 11 | 18 | 18 | 0.52 | 145608431 | 145537197 | tier1 | In-frame | 468 | NA | 0.36753 |
| UCS | TCGA-ND-A4WF-01A | TCGA-ND-A4WF | ADCK5|CPSF1 | ADCK5 | CPSF1 | 8 | 8 | 1 | -1 | 3 | 4 | 4 | 0.089 | 145608431 | 145619375 | tier1 | Out-of-frame | 466 | NA | 0.35552 |
| LIHC | TCGA-2Y-A9GZ-01A | TCGA-2Y-A9GZ | ESRRA|KCNK4 | ESRRA | KCNK4 | 11 | 11 | 1 | 1 | 70 | 58 | 53 | 0.22 | 64074976 | 64064350 | tier1 | Out-of-frame | 5836 | NA | 0.37362 |
| SKCM | TCGA-GN-A4U3-06A | TCGA-GN-A4U3 | ESRRA|C11orf20 | ESRRA | C11orf20 | 11 | 11 | 1 | 1 | 99 | 76 | 74 | 0.26 | 64074976 | 64070954 | tier1 | In-frame | 5835 | NA | 0 |
| SARC | TCGA-DX-A7EI-01A | TCGA-DX-A7EI | ADAMTS20|C12orf28 | ADAMTS20 | C12orf28 | 12 | 12 | -1 | 1 | 2 | 1 | 1 | 0.016 | 43925839 | 70329893 | tier2 | Out-of-frame | 441 | NA | 0 |
| BRCA | TCGA-A2-A25D-01A | TCGA-A2-A25D | ADCY5|PTPLB | ADCY5 | PTPLB | 3 | 3 | -1 | -1 | 3 | 6 | 6 | 0.091 | 123166259 | 123247321 | tier1 | Out-of-frame | 473 | NA | 0.36756 |
| LUAD | TCGA-55-A493-01A | TCGA-55-A493 | PARP14|TASP1 | PARP14 | TASP1 | 3 | 20 | 1 | -1 | 4 | 3 | 3 | 0.66 | 122420482 | 13514788 | tier1 | In-frame | 12299 | NA | 0.35182 |
| BRCA | TCGA-D8-A27N-01A | TCGA-D8-A27N | TNKS|ASAH1 | TNKS | ASAH1 | 8 | 8 | 1 | -1 | 35 | 22 | 22 | 0.89 | 9473187 | 17922040 | tier1 | In-frame | 18355 | NA | 0 |
| LUAD | TCGA-67-6217-01A | TCGA-67-6217 | TNKS|AC068020.1 | TNKS | AC068020.1 | 8 | 8 | 1 | 1 | 16 | 5 | 5 | 3.4 | 9437893 | 8101621 | tier1 | CDS-3UTR | 18354 | NA | 0 |
| BLCA | TCGA-XF-AAN0-01A | TCGA-XF-AAN0 | TRIB1|SAE1 | TRIB1 | SAE1 | 8 | 19 | 1 | 1 | 6 | 17 | 17 | 4 | 126443504 | 47706928 | tier1 | Out-of-frame | 18604 | NA | 0 |
| BRCA | TCGA-E2-A105-01A | TCGA-E2-A105 | TRIB1|SLC25A32 | TRIB1 | SLC25A32 | 8 | 8 | 1 | -1 | 5 | 9 | 6 | 0.37 | 126445851 | 104420012 | tier1 | Out-of-frame | 18605 | NA | 0 |
| BRCA | TCGA-B6-A0IJ-01A | TCGA-B6-A0IJ | TRIB1|NSMCE2 | TRIB1 | NSMCE2 | 8 | 8 | 1 | 1 | 14 | 14 | 13 | 0.15 | 126443504 | 126369461 | tier1 | Out-of-frame | 18603 | non-validated | 0 |
| LUAD | TCGA-55-7903-01A | TCGA-55-7903 | TRIB1|NSMCE2 | TRIB1 | NSMCE2 | 8 | 8 | 1 | 1 | 4 | 4 | 3 | 0.15 | 126445851 | 126369461 | tier1 | Out-of-frame | 18602 | NA | 0 |
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