Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LGG | TCGA-FN-7833-01A | TCGA-FN-7833 | HPSE2|CWF19L1 | HPSE2 | CWF19L1 | 10 | 10 | -1 | -1 | 4 | 1 | 1 | 0.75 | 100903995 | 102003534 | tier3 | In-frame | 7958 | NA | 0.34542 |
| LAML | TCGA-AB-2940-03A | TCGA-AB-2940 | ADRBK1|STAT6 | ADRBK1 | STAT6 | 11 | 12 | 1 | -1 | 2 | 3 | 2 | 0.14 | 67054027 | 57496773 | tier4 | NA | 543 | NA | 0.3889 |
| BRCA | TCGA-AO-A129-01A | TCGA-AO-A129 | ADRBK1|BAIAP2 | ADRBK1 | BAIAP2 | 11 | 17 | 1 | 1 | 7 | 10 | 10 | 0.034 | 67051844 | 79058632 | tier1 | In-frame | 540 | NA | 0.3888 |
| BRCA | TCGA-AR-A0TS-01A | TCGA-AR-A0TS | ADRBK1|IQGAP1 | ADRBK1 | IQGAP1 | 11 | 15 | 1 | 1 | 27 | 18 | 7 | 0.89 | 67034283 | 90969342 | tier1 | In-frame | 541 | NA | 0.39145 |
| BRCA | TCGA-A2-A0CL-01A | TCGA-A2-A0CL | ADRBK1|POLD4 | ADRBK1 | POLD4 | 11 | 11 | 1 | -1 | 11 | 5 | 4 | 0.032 | 67034283 | 67120548 | tier1 | Out-of-frame | 542 | NA | 0.38501 |
| SARC | TCGA-SI-A71O-01A | TCGA-SI-A71O | KDM2A|SLC5A4 | KDM2A | SLC5A4 | 11 | 22 | 1 | -1 | 3 | 5 | 3 | 0.011 | 66947688 | 32650200 | tier1 | Out-of-frame | 8643 | NA | 0.33302 |
| LUAD | TCGA-86-8054-01A | TCGA-86-8054 | KDM2A|DDR2 | KDM2A | DDR2 | 11 | 1 | 1 | 1 | 14 | 21 | 19 | 0.061 | 67007840 | 162749902 | tier1 | In-frame | 8629 | NA | 0.37998 |
| BRCA | TCGA-A1-A0SN-01A | TCGA-A1-A0SN | KDM2A|MAP3K3 | KDM2A | MAP3K3 | 11 | 17 | 1 | 1 | 367 | 191 | 176 | 1.1 | 66999431 | 61759126 | tier1 | Out-of-frame | 8632 | NA | 0.37722 |
| BRCA | TCGA-A2-A0D2-01A | TCGA-A2-A0D2 | KDM2A|FBXO3 | KDM2A | FBXO3 | 11 | 11 | 1 | -1 | 2 | 2 | 2 | 0.14 | 66949363 | 33792376 | tier2 | Out-of-frame | 8630 | non-validated | 0.35128 |
| BRCA | TCGA-AO-A0J6-01A | TCGA-AO-A0J6 | KDM2A|GRIP1 | KDM2A | GRIP1 | 11 | 12 | 1 | -1 | 2 | 2 | 1 | 0.35 | 66888829 | 66990707 | tier3 | Out-of-frame | 8631 | non-validated | 0.36251 |
| BRCA | TCGA-AO-A0J3-01A | TCGA-AO-A0J3 | KDM2A|PPP6R3 | KDM2A | PPP6R3 | 11 | 11 | 1 | 1 | 61 | 66 | 60 | 0.34 | 66888829 | 68363565 | tier1 | Out-of-frame | 8635 | NA | 0 |
| BRCA | TCGA-B6-A0IG-01A | TCGA-B6-A0IG | KDM2A|RHOD | KDM2A | RHOD | 11 | 11 | 1 | 1 | 86 | 49 | 44 | 0.26 | 67018269 | 66833367 | tier1 | Out-of-frame | 8640 | NA | 0.37063 |
| BRCA | TCGA-EW-A1PB-01A | TCGA-EW-A1PB | KDM2A|RHOD | KDM2A | RHOD | 11 | 11 | 1 | 1 | 19 | 27 | 26 | 0.26 | 66888829 | 66833367 | tier1 | In-frame | 8642 | non-validated | 0.37063 |
| BRCA | TCGA-BH-A18R-01A | TCGA-BH-A18R | KDM2A|SYT12 | KDM2A | SYT12 | 11 | 11 | 1 | 1 | 4 | 5 | 4 | 0.3 | 66888829 | 66777350 | tier1 | CDS-5UTR | 8645 | non-validated | 0.34048 |
| CHOL | TCGA-W5-AA2X-01A | TCGA-W5-AA2X | KDM2A|RBM14 | KDM2A | RBM14 | 11 | 11 | 1 | 1 | 4 | 9 | 9 | 0.054 | 66888829 | 66391685 | tier1 | Out-of-frame | 8636 | NA | 0.36895 |
| GBM | TCGA-02-2486-01A | TCGA-02-2486 | KDM2A|SYT12 | KDM2A | SYT12 | 11 | 11 | 1 | 1 | 3 | 7 | 7 | 0.3 | 66999431 | 66812064 | tier1 | In-frame | 8644 | NA | 0.34048 |
| KIRC | TCGA-B0-5713-01A | TCGA-B0-5713 | KDM2A|PACS1 | KDM2A | PACS1 | 11 | 11 | 1 | 1 | 5 | 7 | 6 | 0.007 | 66888829 | 66010383 | tier1 | Out-of-frame | 8634 | NA | 0.3594 |
| LIHC | TCGA-BC-A112-01A | TCGA-BC-A112 | KDM2A|C11orf80 | KDM2A | C11orf80 | 11 | 11 | 1 | 1 | 17 | 5 | 4 | 0.54 | 66949363 | 66526514 | tier1 | CDS-5UTR | 8627 | NA | 0 |
| LIHC | TCGA-DD-AADF-01A | TCGA-DD-AADF | KDM2A|RHOD | KDM2A | RHOD | 11 | 11 | 1 | 1 | 52 | 30 | 29 | 0.26 | 66999431 | 66837896 | tier1 | In-frame | 8641 | NA | 0.37063 |
| LUAD | TCGA-99-8025-01A | TCGA-99-8025 | KDM2A|PACS1 | KDM2A | PACS1 | 11 | 11 | 1 | 1 | 6 | 13 | 13 | 0.007 | 66888829 | 65960957 | tier1 | Out-of-frame | 8633 | NA | 0.3594 |
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