Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SKCM | TCGA-YD-A9TA-06A | TCGA-YD-A9TA | PPIH|CCDC30 | PPIH | CCDC30 | 1 | 1 | 1 | 1 | 6 | 6 | 3 | 2.1 | 43133111 | 43047031 | tier1 | 3UTR-CDS | 13296 | NA | 0.34867 |
| GBM | TCGA-76-4929-01A | TCGA-76-4929 | JMJD1C|NRBF2 | JMJD1C | NRBF2 | 10 | 10 | -1 | 1 | 4 | 15 | 14 | 0.57 | 65024411 | 64905969 | tier1 | In-frame | 8501 | NA | 0.36476 |
| PRAD | TCGA-J4-A83I-01A | TCGA-J4-A83I | JMJD1C|ANK3 | JMJD1C | ANK3 | 10 | 10 | -1 | -1 | 14 | 4 | 4 | 1.3 | 65024411 | 62374982 | tier2 | In-frame | 8500 | NA | 0.37986 |
| SARC | TCGA-FX-A3NK-01A | TCGA-FX-A3NK | THOP1|NOTCH3 | THOP1 | NOTCH3 | 19 | 19 | 1 | -1 | 2 | 1 | 1 | 0.06 | 2785676 | 15308389 | tier2 | In-frame | 17775 | NA | 0 |
| COAD | TCGA-D5-6536-01A | TCGA-D5-6536 | REG3A|RFWD2 | REG3A | RFWD2 | 2 | 1 | -1 | -1 | 2 | 1 | 1 | 0.37 | 79384133 | 176129420 | tier3 | NA | 14535 | NA | 0 |
| SKCM | TCGA-DA-A95Y-06A | TCGA-DA-A95Y | EIF2AK3|NBAS | EIF2AK3 | NBAS | 2 | 2 | -1 | -1 | 43 | 51 | 48 | 0.35 | 88926485 | 15564592 | tier1 | In-frame | 5425 | NA | 0.3742 |
| LUSC | TCGA-77-8131-01A | TCGA-77-8131 | MALT1|NOL4 | MALT1 | NOL4 | 18 | 18 | 1 | -1 | 2 | 1 | 1 | 1.2 | 56367823 | 31432999 | tier3 | In-frame | 9780 | NA | 0.3693 |
| BRCA | TCGA-OL-A6VO-01A | TCGA-OL-A6VO | MBOAT1|FYN | MBOAT1 | FYN | 6 | 6 | -1 | -1 | 31 | 48 | 37 | 0.42 | 20212367 | 111983150 | tier1 | Out-of-frame | 10059 | NA | 0.38684 |
| SKCM | TCGA-D3-A51G-06A | TCGA-D3-A51G | MBOAT1|F13A1 | MBOAT1 | F13A1 | 6 | 6 | -1 | -1 | 2 | 2 | 2 | 0.038 | 20113107 | 6225093 | tier3 | In-frame | 10058 | NA | 0.35324 |
| LAML | TCGA-AB-3007-03A | TCGA-AB-3007 | AZU1|TYK2 | AZU1 | TYK2 | 19 | 19 | 1 | -1 | 2 | 4 | 2 | 0.076 | 832017 | 10491352 | tier3 | 3UTR-5UTR | 1846 | non-validated | 0.37639 |
| GBM | TCGA-41-5651-01A | TCGA-41-5651 | NEGR1|ZRANB2 | NEGR1 | ZRANB2 | 1 | 1 | -1 | -1 | 2 | 6 | 4 | 0.015 | 72748002 | 71544391 | tier3 | In-frame | 11348 | validated | 0.3663 |
| SKCM | TCGA-ER-A3ET-06A | TCGA-ER-A3ET | NEGR1|CYP2J2 | NEGR1 | CYP2J2 | 1 | 1 | -1 | -1 | 6 | 10 | 9 | 0.39 | 72748002 | 60381772 | tier1 | Out-of-frame | 11346 | NA | 0.34989 |
| BRCA | TCGA-OL-A5RW-01A | TCGA-OL-A5RW | NEGR1|C1orf173 | NEGR1 | C1orf173 | 1 | 1 | -1 | -1 | 7 | 3 | 2 | 0.12 | 72748002 | 75114999 | tier1 | In-frame | 11345 | NA | 0 |
| SARC | TCGA-DX-AB36-01A | TCGA-DX-AB36 | NEGR1|ZFYVE9 | NEGR1 | ZFYVE9 | 1 | 1 | -1 | 1 | 22 | 13 | 12 | 0.29 | 72748002 | 52682041 | tier1 | CDS-5UTR | 11347 | NA | 0.37134 |
| ACC | TCGA-OR-A5J9-01A | TCGA-OR-A5J9 | BSG|STAT6 | BSG | STAT6 | 19 | 12 | 1 | -1 | 2 | 30 | 19 | 1 | 583492 | 57496773 | tier3 | NA | 2250 | NA | 0.37685 |
| KICH | TCGA-KL-8339-01A | TCGA-KL-8339 | BSG|NCALD | BSG | NCALD | 19 | 8 | 1 | -1 | 2 | 6 | 2 | 0.27 | 583492 | 102813898 | tier3 | 3UTR-5UTR | 2248 | NA | 0.37052 |
| LGG | TCGA-DU-5851-01A | TCGA-DU-5851 | BSG|ARFGEF2 | BSG | ARFGEF2 | 19 | 20 | 1 | 1 | 2 | 10 | 5 | 2.2 | 583492 | 47615777 | tier4 | 3UTR-CDS | 2245 | NA | 0.36917 |
| LUAD | TCGA-50-6673-01A | TCGA-50-6673 | BSG|PLEKHB2 | BSG | PLEKHB2 | 19 | 2 | 1 | 1 | 2 | 3 | 1 | 0.025 | 583492 | 131876464 | tier3 | 3UTR-5UTR | 2249 | NA | 0.36501 |
| THCA | TCGA-EM-A3AL-01A | TCGA-EM-A3AL | BSG|EEA1 | BSG | EEA1 | 19 | 12 | 1 | -1 | 2 | 2 | 2 | 0.005 | 583492 | 93229203 | tier3 | NA | 2247 | non-validated | 0.37582 |
| UCEC | TCGA-EO-A3B0-01A | TCGA-EO-A3B0 | BSG|CCT5 | BSG | CCT5 | 19 | 5 | 1 | 1 | 2 | 24 | 5 | 0.91 | 583492 | 10250033 | tier3 | 3UTR-5UTR | 2246 | NA | 0.37258 |
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