Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUAD | TCGA-67-6217-01A | TCGA-67-6217 | BPTF|BCAS3 | BPTF | BCAS3 | 17 | 17 | 1 | 1 | 6 | 3 | 2 | 0.034 | 65936772 | 59445688 | tier1 | Out-of-frame | 2158 | NA | 0.35832 |
| MESO | TCGA-NQ-A57I-01A | TCGA-NQ-A57I | BPTF|PITPNC1 | BPTF | PITPNC1 | 17 | 17 | 1 | 1 | 3 | 2 | 2 | 0.85 | 65871136 | 65671595 | tier1 | Out-of-frame | 2169 | NA | 0.36324 |
| SKCM | TCGA-ER-A19W-06A | TCGA-ER-A19W | BPTF|NOL11 | BPTF | NOL11 | 17 | 17 | 1 | 1 | 25 | 4 | 3 | 0.29 | 65822453 | 65739595 | tier1 | Out-of-frame | 2162 | NA | 0.36094 |
| STAD | TCGA-BR-4357-01A | TCGA-BR-4357 | BPTF|PITPNC1 | BPTF | PITPNC1 | 17 | 17 | 1 | 1 | 3 | 5 | 5 | 0.85 | 65871136 | 65628259 | tier1 | Out-of-frame | 2167 | NA | 0.36324 |
| TGCT | TCGA-2G-AAKL-01A | TCGA-2G-AAKL | BPTF|NOL11 | BPTF | NOL11 | 17 | 17 | 1 | 1 | 11 | 18 | 18 | 0.29 | 65944422 | 65715790 | tier1 | In-frame | 2161 | NA | 0.36094 |
| UCEC | TCGA-D1-A3JP-01A | TCGA-D1-A3JP | BPTF|RAD17 | BPTF | RAD17 | 17 | 5 | 1 | 1 | 17 | 14 | 14 | 0.37 | 65871860 | 68692224 | tier1 | Out-of-frame | 2171 | NA | 0.37185 |
| UCS | TCGA-N8-A56S-01A | TCGA-N8-A56S | BPTF|NOL11 | BPTF | NOL11 | 17 | 17 | 1 | 1 | 15 | 7 | 5 | 0.29 | 65862803 | 65739859 | tier1 | Out-of-frame | 2163 | NA | 0.36094 |
| ACC | TCGA-OR-A5JA-01A | TCGA-OR-A5JA | PAH|METAP2 | PAH | METAP2 | 12 | 12 | -1 | 1 | 6 | 7 | 7 | 0.53 | 103288513 | 95906577 | tier1 | Out-of-frame | 12192 | NA | 0.36769 |
| BRCA | TCGA-OL-A66I-01A | TCGA-OL-A66I | PAH|NINJ2 | PAH | NINJ2 | 12 | 12 | -1 | -1 | 20 | 4 | 4 | 0.64 | 103306569 | 675344 | tier1 | In-frame | 12193 | NA | 0.34221 |
| BRCA | TCGA-AN-A0FX-01A | TCGA-AN-A0FX | RRM2|RREB1 | RRM2 | RREB1 | 2 | 6 | 1 | 1 | 2 | 3 | 3 | 0.094 | 10269281 | 7176888 | tier2 | CDS-5UTR | 15131 | NA | 0 |
| PRAD | TCGA-HC-A48F-01A | TCGA-HC-A48F | PTEN|NRP1 | PTEN | NRP1 | 10 | 10 | 1 | -1 | 2 | 4 | 4 | 0.16 | 89693008 | 33559784 | tier2 | Out-of-frame | 13758 | NA | 0.38903 |
| LGG | TCGA-FG-A87N-01A | TCGA-FG-A87N | PTEN|PYGB | PTEN | PYGB | 10 | 20 | 1 | 1 | 8 | 21 | 21 | 0.11 | 89693008 | 25249765 | tier1 | In-frame | 13759 | NA | 0.37611 |
| PRAD | TCGA-YL-A8SA-01A | TCGA-YL-A8SA | PTEN|GRID1 | PTEN | GRID1 | 10 | 10 | 1 | -1 | 7 | 13 | 13 | 1.9 | 89690846 | 87489371 | tier1 | Out-of-frame | 13756 | NA | 0.37995 |
| BLCA | TCGA-ZF-A9RE-01A | TCGA-ZF-A9RE | PTEN|RNLS | PTEN | RNLS | 10 | 10 | 1 | -1 | 13 | 33 | 31 | 0.026 | 89693008 | 90045263 | tier1 | In-frame | 13760 | NA | 0.37436 |
| CESC | TCGA-IR-A3LL-01A | TCGA-IR-A3LL | PTEN|BTRC | PTEN | BTRC | 10 | 10 | 1 | 1 | 2 | 1 | 1 | 2 | 89693008 | 103290994 | tier2 | Out-of-frame | 13753 | NA | 0.38705 |
| LUSC | TCGA-34-A5IX-01A | TCGA-34-A5IX | PTEN|KIF20B | PTEN | KIF20B | 10 | 10 | 1 | 1 | 2 | 6 | 6 | 0.004 | 89653866 | 91497144 | tier2 | Out-of-frame | 13757 | NA | 0.37769 |
| PRAD | TCGA-VP-A87J-01A | TCGA-VP-A87J | PTEN|C1orf226 | PTEN | C1orf226 | 10 | 1 | 1 | 1 | 5 | 36 | 36 | 1.3 | 89653866 | 162352972 | tier1 | In-frame | 13754 | NA | 0 |
| PRAD | TCGA-EJ-5521-01A | TCGA-EJ-5521 | PTEN|CTNNA3 | PTEN | CTNNA3 | 10 | 10 | 1 | -1 | 2 | 2 | 2 | 0.3 | 89690846 | 68979628 | tier2 | Out-of-frame | 13755 | NA | 0.37661 |
| SKCM | TCGA-DA-A95Y-06A | TCGA-DA-A95Y | RNASEH1|DYSF | RNASEH1 | DYSF | 2 | 2 | -1 | 1 | 10 | 2 | 2 | 0.13 | 3599734 | 71871095 | tier1 | Out-of-frame | 14720 | NA | 0 |
| PCPG | TCGA-QR-A6GR-01A | TCGA-QR-A6GR | SCG2|PTGS1 | SCG2 | PTGS1 | 2 | 9 | -1 | 1 | 2 | 2 | 1 | 1.6 | 224463684 | 125140178 | tier4 | Out-of-frame | 15406 | NA | 0 |
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