Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUSC | TCGA-56-8082-01A | TCGA-56-8082 | KRT19|CTNND1 | KRT19 | CTNND1 | 17 | 11 | -1 | 1 | 3 | 7 | 1 | 1.1 | 39679869 | 57574387 | tier4 | 3UTR-CDS | 9143 | NA | 0.38403 |
| LUSC | TCGA-56-8304-01A | TCGA-56-8304 | KRT19|PFKP | KRT19 | PFKP | 17 | 10 | -1 | 1 | 2 | 19 | 11 | 0.47 | 39679869 | 3177928 | tier4 | 3UTR-CDS | 9147 | NA | 0.36975 |
| LUSC | TCGA-94-A5I4-01A | TCGA-94-A5I4 | KRT19|PLEKHA5 | KRT19 | PLEKHA5 | 17 | 12 | -1 | 1 | 2 | 13 | 6 | 1.1 | 39679869 | 19441012 | tier4 | NA | 9148 | NA | 0.3707 |
| STAD | TCGA-BR-7197-01A | TCGA-BR-7197 | KRT19|IKZF3 | KRT19 | IKZF3 | 17 | 17 | -1 | -1 | 8 | 26 | 20 | 5.8 | 39684080 | 37944627 | tier4 | Out-of-frame | 9146 | NA | 0.38007 |
| STAD | TCGA-VQ-AA6J-01A | TCGA-VQ-AA6J | CLCN5|PAGE1 | CLCN5 | PAGE1 | X | X | 1 | -1 | 5 | 29 | 27 | 0.067 | 49689924 | 49455977 | tier1 | In-frame | 3767 | NA | 0.35141 |
| SARC | TCGA-3B-A9HL-01A | TCGA-3B-A9HL | PDE7B|KIF21A | PDE7B | KIF21A | 6 | 12 | 1 | -1 | 4 | 3 | 2 | 0.37 | 136472393 | 39726546 | tier1 | Out-of-frame | 12515 | NA | 0.35172 |
| BRCA | TCGA-A2-A0D0-01A | TCGA-A2-A0D0 | KSR2|P2RX4 | KSR2 | P2RX4 | 12 | 12 | -1 | 1 | 2 | 3 | 3 | 1.2 | 118198816 | 121670217 | tier2 | In-frame | 9167 | validated | 0.37658 |
| SARC | TCGA-3B-A9HO-01A | TCGA-3B-A9HO | KSR2|CEP290 | KSR2 | CEP290 | 12 | 12 | -1 | -1 | 6 | 14 | 13 | 1.4 | 118198816 | 88444210 | tier1 | Out-of-frame | 9166 | NA | 0.36705 |
| BRCA | TCGA-AC-A5XS-01A | TCGA-AC-A5XS | POLR1C|MDGA1 | POLR1C | MDGA1 | 6 | 6 | 1 | -1 | 7 | 6 | 4 | 0.52 | 43487576 | 37631882 | tier1 | In-frame | 13168 | NA | 0.36565 |
| UCEC | TCGA-E6-A8L9-01A | TCGA-E6-A8L9 | ASXL1|DEFB118 | ASXL1 | DEFB118 | 20 | 20 | 1 | 1 | 7 | 4 | 2 | 0.29 | 30954269 | 29960660 | tier1 | Out-of-frame | 1553 | NA | 0.34228 |
| BRCA | TCGA-BH-A1FM-01A | TCGA-BH-A1FM | ASXL1|PDRG1 | ASXL1 | PDRG1 | 20 | 20 | 1 | -1 | 5 | 7 | 7 | 0.099 | 30959677 | 30536685 | tier1 | 3UTR-CDS | 1554 | NA | 0.34737 |
| BRCA | TCGA-A7-A13D-01B | TCGA-A7-A13D | ASXL1|TM9SF4 | ASXL1 | TM9SF4 | 20 | 20 | 1 | 1 | 9 | 3 | 3 | 0.083 | 30956926 | 30720816 | tier1 | CDS-5UTR | 1556 | validated | 0.34223 |
| BRCA | TCGA-BH-A1FD-01A | TCGA-BH-A1FD | ASXL1|XKR7 | ASXL1 | XKR7 | 20 | 20 | 1 | 1 | 4 | 1 | 1 | 0.21 | 30956926 | 30582871 | tier3 | Out-of-frame | 1559 | NA | 0.33978 |
| ESCA | TCGA-L5-A891-01A | TCGA-L5-A891 | ASXL1|TPX2 | ASXL1 | TPX2 | 20 | 20 | 1 | 1 | 2 | 14 | 12 | 3.2 | 30956926 | 30359363 | tier2 | Out-of-frame | 1558 | non-validated | 0.35941 |
| LUAD | TCGA-91-7771-01A | TCGA-91-7771 | ASXL1|TM9SF4 | ASXL1 | TM9SF4 | 20 | 20 | 1 | 1 | 4 | 5 | 4 | 0.083 | 30956926 | 30720816 | tier1 | CDS-5UTR | 1555 | NA | 0.34223 |
| STAD | TCGA-VQ-A8E2-01A | TCGA-VQ-A8E2 | ASXL1|TM9SF4 | ASXL1 | TM9SF4 | 20 | 20 | 1 | 1 | 8 | 57 | 49 | 0.083 | 30956926 | 30720816 | tier1 | CDS-5UTR | 1557 | NA | 0.34223 |
| UCS | TCGA-N9-A4PZ-01A | TCGA-N9-A4PZ | ASXL1|C20orf160 | ASXL1 | C20orf160 | 20 | 20 | 1 | 1 | 7 | 8 | 8 | 0.053 | 30956926 | 30613659 | tier1 | Out-of-frame | 1552 | NA | 0 |
| BRCA | TCGA-A2-A0D0-01A | TCGA-A2-A0D0 | LPAR3|ST6GALNAC3 | LPAR3 | ST6GALNAC3 | 1 | 1 | -1 | 1 | 5 | 6 | 4 | 0.019 | 85331068 | 77093137 | tier1 | Out-of-frame | 9436 | validated | 0.35677 |
| LIHC | TCGA-DD-AADQ-01A | TCGA-DD-AADQ | FGG|CLCN3 | FGG | CLCN3 | 4 | 4 | -1 | 1 | 2 | 50 | 24 | 0.12 | 155525286 | 170623929 | tier3 | NA | 6513 | NA | 0.37233 |
| LIHC | TCGA-DD-AADP-01A | TCGA-DD-AADP | FGA|ZNFX1 | FGA | ZNFX1 | 4 | 20 | -1 | -1 | 2 | 9 | 4 | 0.97 | 155506412 | 47863418 | tier4 | 3UTR-CDS | 6425 | NA | 0.37331 |
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