Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| ESCA | TCGA-LN-A49L-01A | TCGA-LN-A49L | CHD7|KAT6A | CHD7 | KAT6A | 8 | 8 | 1 | -1 | 3 | 23 | 21 | 0.082 | 61591641 | 41845081 | tier1 | 5UTR-CDS | 3640 | validated | 0.34245 |
| OV | TCGA-24-1604-01A | TCGA-24-1604 | CHD7|WHSC1L1 | CHD7 | WHSC1L1 | 8 | 8 | 1 | -1 | 11 | 5 | 4 | 0.048 | 61591641 | 38162963 | tier1 | 5UTR-CDS | 3647 | NA | 0.35603 |
| UCEC | TCGA-A5-A2K4-01A | TCGA-A5-A2K4 | CHD7|EMID1 | CHD7 | EMID1 | 8 | 22 | 1 | 1 | 6 | 5 | 5 | 0.23 | 61714152 | 29610915 | tier1 | Out-of-frame | 3638 | NA | 0.3511 |
| BRCA | TCGA-AR-A1AU-01A | TCGA-AR-A1AU | CHD7|ASPH | CHD7 | ASPH | 8 | 8 | 1 | -1 | 9 | 9 | 8 | 0.57 | 61655656 | 62596747 | tier1 | Out-of-frame | 3636 | NA | 0.35171 |
| BRCA | TCGA-D8-A1JL-01A | TCGA-D8-A1JL | CHD7|CCDC58 | CHD7 | CCDC58 | 8 | 3 | 1 | -1 | 117 | 122 | 109 | 3.2 | 61743136 | 122081874 | tier1 | Out-of-frame | 3637 | NA | 0.3478 |
| BRCA | TCGA-C8-A27A-01A | TCGA-C8-A27A | CHD7|TACC1 | CHD7 | TACC1 | 8 | 8 | 1 | 1 | 8 | 7 | 6 | 0.069 | 61693989 | 38599869 | tier1 | CDS-5UTR | 3642 | NA | 0.36695 |
| COAD | TCGA-F4-6807-01A | TCGA-F4-6807 | CHD7|TCF7L2 | CHD7 | TCF7L2 | 8 | 10 | 1 | 1 | 52 | 28 | 19 | 0.12 | 61655656 | 114900943 | tier4 | In-frame | 3643 | NA | 0.3754 |
| COAD | TCGA-4T-AA8H-01A | TCGA-4T-AA8H | CHD7|TOX | CHD7 | TOX | 8 | 8 | 1 | -1 | 26 | 10 | 10 | 0.13 | 61655656 | 59872567 | tier1 | In-frame | 3645 | NA | 0.34371 |
| COAD | TCGA-CM-6172-01A | TCGA-CM-6172 | CHD7|TOX | CHD7 | TOX | 8 | 8 | 1 | -1 | 54 | 40 | 36 | 0.13 | 61655656 | 59872567 | tier1 | In-frame | 3646 | NA | 0.34371 |
| GBM | TCGA-06-5414-01A | TCGA-06-5414 | CHD7|TOX | CHD7 | TOX | 8 | 8 | 1 | -1 | 3 | 15 | 11 | 0.13 | 61655656 | 59872567 | tier1 | In-frame | 3644 | NA | 0.34371 |
| PRAD | TCGA-XK-AAIV-01A | TCGA-XK-AAIV | CHD7|FAM164A | CHD7 | FAM164A | 8 | 8 | 1 | 1 | 7 | 1 | 1 | 0.039 | 61591641 | 79601457 | tier3 | 5UTR-CDS | 3639 | NA | 0.35265 |
| UCEC | TCGA-AJ-A3TW-01A | TCGA-AJ-A3TW | CHD7|RAB2A | CHD7 | RAB2A | 8 | 8 | 1 | 1 | 6 | 4 | 4 | 0.41 | 61591641 | 61471411 | tier1 | 5UTR-CDS | 3641 | NA | 0.37315 |
| CESC | TCGA-EA-A3HR-01A | TCGA-EA-A3HR | KRT19|SLC38A5 | KRT19 | SLC38A5 | 17 | X | -1 | -1 | 2 | 3 | 2 | 1.6 | 39679869 | 48327824 | tier3 | 3UTR-5UTR | 9149 | NA | 0.37008 |
| PAAD | TCGA-IB-7885-01A | TCGA-IB-7885 | KRT19|EIF2AK2 | KRT19 | EIF2AK2 | 17 | 2 | -1 | -1 | 2 | 31 | 10 | 0.041 | 39679869 | 37342384 | tier3 | NA | 9145 | NA | 0.38442 |
| MESO | TCGA-MQ-A4KX-01A | TCGA-MQ-A4KX | KRT19|C7 | KRT19 | C7 | 17 | 5 | -1 | 1 | 2 | 13 | 5 | 2.6 | 39679869 | 40954982 | tier3 | NA | 9139 | NA | 0.3747 |
| BRCA | TCGA-JL-A3YX-01A | TCGA-JL-A3YX | KRT19|COL5A1 | KRT19 | COL5A1 | 17 | 9 | -1 | 1 | 2 | 6 | 6 | 0.42 | 39679869 | 137533620 | tier3 | 3UTR-5UTR | 9142 | NA | 0.37539 |
| CESC | TCGA-EX-A1H5-01A | TCGA-EX-A1H5 | KRT19|CCT5 | KRT19 | CCT5 | 17 | 5 | -1 | 1 | 3 | 24 | 15 | 0.052 | 39679869 | 10250033 | tier1 | 3UTR-5UTR | 9140 | non-validated | 0.37359 |
| HNSC | TCGA-CN-4739-01A | TCGA-CN-4739 | KRT19|CLDN7 | KRT19 | CLDN7 | 17 | 17 | -1 | -1 | 2 | 3 | 2 | 0.34 | 39679869 | 7166264 | tier3 | 3UTR-5UTR | 9141 | NA | 0.36949 |
| HNSC | TCGA-CQ-6225-01A | TCGA-CQ-6225 | KRT19|CTNND1 | KRT19 | CTNND1 | 17 | 11 | -1 | 1 | 2 | 10 | 4 | 1.1 | 39679869 | 57574387 | tier2 | 3UTR-CDS | 9144 | non-validated | 0.38403 |
| LUAD | TCGA-44-7670-01A | TCGA-44-7670 | KRT19|ANKS1A | KRT19 | ANKS1A | 17 | 6 | -1 | 1 | 2 | 13 | 2 | 0.007 | 39679869 | 34977682 | tier4 | NA | 9138 | NA | 0.37689 |
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