Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| PRAD | TCGA-EJ-7782-01A | TCGA-EJ-7782 | PKHD1|CAGE1 | PKHD1 | CAGE1 | 6 | 6 | -1 | -1 | 3 | 1 | 1 | 0.16 | 51875107 | 7334323 | tier2 | Out-of-frame | 12905 | NA | 0.34679 |
| KIRC | TCGA-CJ-5681-01A | TCGA-CJ-5681 | PLAC1|DSCAM | PLAC1 | DSCAM | X | 21 | -1 | -1 | 9 | 12 | 12 | 1.2 | 133736081 | 41561165 | tier1 | 5UTR-CDS | 12943 | validated | 0.37442 |
| SARC | TCGA-FX-A3TO-01A | TCGA-FX-A3TO | PYGO1|FBN1 | PYGO1 | FBN1 | 15 | 15 | -1 | -1 | 24 | 5 | 4 | 0.29 | 55880033 | 48791235 | tier1 | In-frame | 13999 | NA | 0 |
| SKCM | TCGA-Z2-AA3S-06A | TCGA-Z2-AA3S | ALK|STK39 | ALK | STK39 | 2 | 2 | -1 | -1 | 3 | 2 | 2 | 3 | 29940444 | 169038600 | tier1 | In-frame | 842 | NA | 0.38398 |
| UCEC | TCGA-A5-A2K2-01A | TCGA-A5-A2K2 | ALK|GALNT14 | ALK | GALNT14 | 2 | 2 | -1 | -1 | 8 | 4 | 3 | 0.61 | 29519754 | 31152353 | tier1 | In-frame | 840 | NA | 0.38271 |
| UCEC | TCGA-EO-A3AS-01A | TCGA-EO-A3AS | ALK|SCEL | ALK | SCEL | 2 | 13 | -1 | 1 | 9 | 11 | 10 | 8.4 | 29754781 | 78202082 | tier1 | In-frame | 841 | NA | 0.38262 |
| LUAD | TCGA-55-6712-01A | TCGA-55-6712 | MTM1|VBP1 | MTM1 | VBP1 | X | X | 1 | 1 | 24 | 4 | 2 | 0.75 | 149787612 | 154448460 | tier1 | In-frame | 10807 | NA | 0.35531 |
| STAD | TCGA-CD-8533-01A | TCGA-CD-8533 | INSR|S1PR2 | INSR | S1PR2 | 19 | 19 | -1 | -1 | 3 | 9 | 9 | 0.008 | 7267356 | 10335623 | tier1 | CDS-5UTR | 8258 | NA | 0.39061 |
| SARC | TCGA-DX-AB2O-01A | TCGA-DX-AB2O | INSR|CEP89 | INSR | CEP89 | 19 | 19 | -1 | -1 | 35 | 15 | 14 | 0.84 | 7267356 | 33370284 | tier1 | Out-of-frame | 8256 | NA | 0.38725 |
| SARC | TCGA-3B-A9HS-01A | TCGA-3B-A9HS | INSR|MGAT4C | INSR | MGAT4C | 19 | 12 | -1 | -1 | 7 | 7 | 6 | 0.29 | 7293803 | 86829042 | tier1 | CDS-5UTR | 8257 | NA | 0.38761 |
| SKCM | TCGA-EB-A6L9-06A | TCGA-EB-A6L9 | PRKCE|GPR126 | PRKCE | GPR126 | 2 | 6 | 1 | 1 | 25 | 11 | 10 | 1.4 | 46070202 | 142758571 | tier1 | Out-of-frame | 13556 | NA | 0.38815 |
| PRAD | TCGA-XK-AAJA-01A | TCGA-XK-AAJA | PRKCE|QPCT | PRKCE | QPCT | 2 | 2 | 1 | 1 | 10 | 11 | 9 | 4.2 | 45879587 | 37579932 | tier1 | In-frame | 13557 | NA | 0.38578 |
| BRCA | TCGA-EW-A3U0-01A | TCGA-EW-A3U0 | PRKCE|CAMKMT | PRKCE | CAMKMT | 2 | 2 | 1 | 1 | 2 | 1 | 1 | 0.3 | 45879587 | 44934538 | tier4 | In-frame | 13555 | non-validated | 0.38313 |
| SKCM | TCGA-D3-A3CF-06A | TCGA-D3-A3CF | RBKS|AC008073.6 | RBKS | AC008073.6 | 2 | 2 | -1 | 1 | 4 | 4 | 3 | 0.33 | 28050434 | 24387068 | tier1 | Out-of-frame | 14433 | NA | 0 |
| BLCA | TCGA-2F-A9KT-01A | TCGA-2F-A9KT | CDC42BPG|EHD1 | CDC42BPG | EHD1 | 11 | 11 | -1 | -1 | 5 | 5 | 5 | 0.022 | 64611882 | 64627808 | tier4 | In-frame | 3345 | NA | 0.37599 |
| SARC | TCGA-DX-A2IZ-01A | TCGA-DX-A2IZ | CHST11|PTPRR | CHST11 | PTPRR | 12 | 12 | 1 | -1 | 41 | 18 | 16 | 2.5 | 104995769 | 71158558 | tier1 | In-frame | 3710 | validated | 0.3714 |
| HNSC | TCGA-P3-A6T4-01A | TCGA-P3-A6T4 | CHST11|TXNRD1 | CHST11 | TXNRD1 | 12 | 12 | 1 | 1 | 6 | 9 | 8 | 0.81 | 104995769 | 104732917 | tier1 | In-frame | 3712 | NA | 0.35279 |
| HNSC | TCGA-CV-7416-01A | TCGA-CV-7416 | CHST11|HCFC2 | CHST11 | HCFC2 | 12 | 12 | 1 | 1 | 3 | 4 | 4 | 0.24 | 104851292 | 104459945 | tier1 | In-frame | 3709 | non-validated | 0.35184 |
| HNSC | TCGA-CV-7183-01A | TCGA-CV-7183 | CHST11|RFX4 | CHST11 | RFX4 | 12 | 12 | 1 | 1 | 4 | 1 | 1 | 0.81 | 104995769 | 107075771 | tier4 | In-frame | 3711 | NA | 0.36207 |
| LAML | TCGA-AB-2920-03B | TCGA-AB-2920 | CHST11|ATP1B4 | CHST11 | ATP1B4 | 12 | X | 1 | 1 | 17 | 14 | 13 | 0.23 | 104995769 | 119500380 | tier1 | In-frame | 3708 | NA | 0.33574 |
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