Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LIHC | TCGA-UB-A7ME-01A | TCGA-UB-A7ME | PRDM10|NT5E | PRDM10 | NT5E | 11 | 6 | -1 | 1 | 5 | 3 | 2 | 0.8 | 129788434 | 86194953 | tier1 | Out-of-frame | 13497 | NA | 0.35286 |
| HNSC | TCGA-CV-6961-01A | TCGA-CV-6961 | TMED10|TTLL5 | TMED10 | TTLL5 | 14 | 14 | -1 | 1 | 133 | 72 | 65 | 0.69 | 75643058 | 76286350 | tier4 | In-frame | 17917 | non-validated | 0 |
| PRAD | TCGA-YL-A8HM-01A | TCGA-YL-A8HM | TMED10|PSMD11 | TMED10 | PSMD11 | 14 | 17 | -1 | 1 | 2 | 7 | 7 | 0.43 | 75614367 | 30773963 | tier2 | Out-of-frame | 17916 | NA | 0 |
| LUSC | TCGA-98-A53I-01A | TCGA-98-A53I | SETMAR|EYS | SETMAR | EYS | 3 | 6 | 1 | -1 | 4 | 2 | 2 | 0.076 | 4345210 | 66115260 | tier1 | Out-of-frame | 15717 | NA | 0 |
| SKCM | TCGA-FS-A1ZB-06A | TCGA-FS-A1ZB | SEMA3E|TSGA14 | SEMA3E | TSGA14 | 7 | 7 | -1 | -1 | 19 | 23 | 23 | 0.25 | 83277744 | 130056807 | tier1 | In-frame | 15548 | NA | 0 |
| ACC | TCGA-OR-A5LH-01A | TCGA-OR-A5LH | DCLK2|LRBA | DCLK2 | LRBA | 4 | 4 | 1 | -1 | 11 | 3 | 3 | 0.13 | 151023964 | 151247050 | tier1 | In-frame | 4604 | NA | 0.35884 |
| SKCM | TCGA-ER-A19H-06A | TCGA-ER-A19H | DCLK2|UST | DCLK2 | UST | 4 | 6 | 1 | 1 | 13 | 15 | 15 | 0.64 | 151000600 | 149394969 | tier1 | In-frame | 4605 | NA | 0.35027 |
| PRAD | TCGA-CH-5766-01A | TCGA-CH-5766 | GPRC5C|CLDN4 | GPRC5C | CLDN4 | 17 | 7 | 1 | 1 | 2 | 4 | 3 | 0.44 | 72443568 | 73245193 | tier3 | 3UTR-5UTR | 7384 | NA | 0.36005 |
| BLCA | TCGA-FD-A3B6-01A | TCGA-FD-A3B6 | ADORA2B|SYN3 | ADORA2B | SYN3 | 17 | 22 | 1 | -1 | 16 | 19 | 14 | 0.055 | 15848897 | 32992722 | tier1 | Out-of-frame | 538 | NA | 0.36902 |
| BRCA | TCGA-AO-A03V-01A | TCGA-AO-A03V | MGMT|LGI4 | MGMT | LGI4 | 10 | 19 | 1 | -1 | 5 | 8 | 8 | 0.18 | 131334641 | 35622946 | tier1 | In-frame | 10322 | NA | 0.36395 |
| LIHC | TCGA-EP-A2KA-01A | TCGA-EP-A2KA | MGMT|DOCK1 | MGMT | DOCK1 | 10 | 10 | 1 | 1 | 3 | 5 | 5 | 0.42 | 131334641 | 129237291 | tier1 | In-frame | 10321 | validated | 0.37682 |
| SARC | TCGA-DX-A3LY-01B | TCGA-DX-A3LY | PA2G4|MARK1 | PA2G4 | MARK1 | 12 | 1 | 1 | 1 | 20 | 29 | 27 | 0.48 | 56498609 | 220752696 | tier1 | Out-of-frame | 12159 | validated | 0.38412 |
| UCEC | TCGA-AJ-A3BF-01A | TCGA-AJ-A3BF | PA2G4|RAB5B | PA2G4 | RAB5B | 12 | 12 | 1 | 1 | 2 | 23 | 22 | 1.1 | 56503719 | 56385881 | tier3 | Out-of-frame | 12160 | NA | 0.38476 |
| UCS | TCGA-N6-A4VG-01A | TCGA-N6-A4VG | ELOVL6|RP11-380D23.1 | ELOVL6 | RP11-380D23.1 | 4 | 4 | -1 | -1 | 35 | 18 | 16 | 4 | 111026653 | 111434695 | tier1 | Out-of-frame | 5537 | NA | 0.32672 |
| LUAD | TCGA-44-7669-01A | TCGA-44-7669 | CDH2|LAMA3 | CDH2 | LAMA3 | 18 | 18 | -1 | 1 | 38 | 17 | 14 | 0.47 | 25727637 | 21394367 | tier1 | Out-of-frame | 3388 | NA | 0.37435 |
| BRCA | TCGA-AC-A2QH-01B | TCGA-AC-A2QH | CDH2|KIAA1328 | CDH2 | KIAA1328 | 18 | 18 | -1 | 1 | 19 | 11 | 7 | 0.75 | 25727637 | 34646853 | tier1 | Out-of-frame | 3387 | NA | 0.37106 |
| SARC | TCGA-MJ-A68H-01A | TCGA-MJ-A68H | CDH2|EPB41L3 | CDH2 | EPB41L3 | 18 | 18 | -1 | -1 | 34 | 18 | 15 | 2.5 | 25727637 | 5489193 | tier1 | CDS-5UTR | 3386 | NA | 0.3761 |
| LIHC | TCGA-ED-A7PX-01A | TCGA-ED-A7PX | KBTBD2|NT5C3 | KBTBD2 | NT5C3 | 7 | 7 | -1 | -1 | 3 | 4 | 4 | 2.9 | 32931148 | 33075600 | tier1 | 5UTR-5UTR | 8560 | NA | 0.35588 |
| BRCA | TCGA-A2-A0T4-01A | TCGA-A2-A0T4 | GSTA4|NADSYN1 | GSTA4 | NADSYN1 | 6 | 11 | -1 | 1 | 5 | 5 | 5 | 1.6 | 52847372 | 71208529 | tier1 | In-frame | 7506 | NA | 0.34801 |
| KIRC | TCGA-A3-3313-01A | TCGA-A3-3313 | PKHD1|RCAN2 | PKHD1 | RCAN2 | 6 | 6 | -1 | -1 | 58 | 38 | 33 | 0.55 | 51695659 | 46216633 | tier1 | Out-of-frame | 12906 | NA | 0.34906 |
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