Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| ACC | TCGA-OR-A5KY-01A | TCGA-OR-A5KY | CHD3|RAD51C | CHD3 | RAD51C | 17 | 17 | 1 | 1 | 71 | 7 | 7 | 1.2 | 7797253 | 56787220 | tier1 | In-frame | 3618 | NA | 0.36977 |
| BLCA | TCGA-GV-A3QH-01A | TCGA-GV-A3QH | ALCAM|SH3KBP1 | ALCAM | SH3KBP1 | 3 | X | 1 | -1 | 67 | 41 | 37 | 0.019 | 105086325 | 19606920 | tier1 | In-frame | 794 | NA | 0.38493 |
| BRCA | TCGA-C8-A12L-01A | TCGA-C8-A12L | ALCAM|EIF2A | ALCAM | EIF2A | 3 | 3 | 1 | 1 | 88 | 76 | 72 | 0.37 | 105086325 | 150270143 | tier1 | In-frame | 793 | non-validated | 0.35756 |
| BRCA | TCGA-BH-A0BP-01A | TCGA-BH-A0BP | ALCAM|YIF1B | ALCAM | YIF1B | 3 | 19 | 1 | -1 | 22 | 16 | 16 | 1.7 | 105086325 | 38800283 | tier1 | In-frame | 795 | NA | 0.35887 |
| OV | TCGA-13-0908-01B | TCGA-13-0908 | YWHAG|RAB11FIP1 | YWHAG | RAB11FIP1 | 7 | 8 | -1 | -1 | 8 | 8 | 7 | 1 | 75988039 | 37735069 | tier1 | Out-of-frame | 20059 | NA | 0 |
| PCPG | TCGA-QR-A6GR-01A | TCGA-QR-A6GR | YWHAG|AL353597.1 | YWHAG | AL353597.1 | 7 | 6 | -1 | 1 | 7 | 2 | 2 | 0.042 | 75988039 | 37502052 | tier1 | In-frame | 20057 | NA | 0 |
| SKCM | TCGA-D9-A149-06A | TCGA-D9-A149 | YWHAG|OPA3 | YWHAG | OPA3 | 7 | 19 | -1 | -1 | 47 | 38 | 36 | 0.007 | 75988039 | 46057169 | tier1 | Out-of-frame | 20058 | NA | 0 |
| BRCA | TCGA-AO-A0J6-01A | TCGA-AO-A0J6 | SIK2|JAK2 | SIK2 | JAK2 | 11 | 9 | 1 | 1 | 2 | 1 | 1 | 0.15 | 111491126 | 5021963 | tier2 | CDS-5UTR | 15912 | validated | 0 |
| LUSC | TCGA-94-7557-01A | TCGA-94-7557 | SIK2|CARD17 | SIK2 | CARD17 | 11 | 11 | 1 | -1 | 41 | 46 | 40 | 0.013 | 111491126 | 104970148 | tier1 | In-frame | 15911 | NA | 0 |
| CESC | TCGA-ZJ-AAXB-01A | TCGA-ZJ-AAXB | SIK2|C11orf53 | SIK2 | C11orf53 | 11 | 11 | 1 | 1 | 13 | 5 | 5 | 5 | 111491126 | 111152123 | tier1 | CDS-5UTR | 15910 | NA | 0 |
| LGG | TCGA-DU-7298-01A | TCGA-DU-7298 | SIK2|MEGF11 | SIK2 | MEGF11 | 11 | 15 | 1 | -1 | 6 | 8 | 8 | 2.1 | 111558886 | 66274826 | tier1 | In-frame | 15913 | NA | 0 |
| PRAD | TCGA-G9-6361-01A | TCGA-G9-6361 | SIK2|PIR | SIK2 | PIR | 11 | X | 1 | -1 | 59 | 40 | 37 | 1.8 | 111583099 | 15477863 | tier1 | In-frame | 15914 | NA | 0 |
| BRCA | TCGA-A8-A09A-01A | TCGA-A8-A09A | SLC16A5|ICT1 | SLC16A5 | ICT1 | 17 | 17 | 1 | 1 | 15 | 11 | 11 | 0.77 | 73096911 | 73015795 | tier1 | In-frame | 16029 | NA | 0 |
| LUAD | TCGA-55-7576-01A | TCGA-55-7576 | SLC16A5|OTOP2 | SLC16A5 | OTOP2 | 17 | 17 | 1 | 1 | 17 | 6 | 6 | 0.16 | 73085399 | 72923318 | tier1 | 5UTR-CDS | 16031 | NA | 0 |
| SKCM | TCGA-Z2-AA3S-06A | TCGA-Z2-AA3S | SLC16A5|KCTD2 | SLC16A5 | KCTD2 | 17 | 17 | 1 | 1 | 3 | 1 | 1 | 0.94 | 73094276 | 73059113 | tier2 | Out-of-frame | 16030 | NA | 0 |
| SARC | TCGA-DX-AB2Z-01A | TCGA-DX-AB2Z | USP47|GALNTL4 | USP47 | GALNTL4 | 11 | 11 | 1 | -1 | 33 | 34 | 32 | 2.4 | 11863771 | 11314740 | tier1 | In-frame | 19397 | NA | 0 |
| SKCM | TCGA-EB-A82C-01A | TCGA-EB-A82C | USP47|RRAS2 | USP47 | RRAS2 | 11 | 11 | 1 | -1 | 5 | 7 | 6 | 0.19 | 11863771 | 14317401 | tier1 | In-frame | 19398 | NA | 0 |
| LGG | TCGA-FG-5963-01A | TCGA-FG-5963 | GLB1|INSC | GLB1 | INSC | 3 | 11 | -1 | 1 | 6 | 6 | 5 | 0.96 | 33109722 | 15260465 | tier1 | In-frame | 7084 | NA | 0.34738 |
| PRAD | TCGA-KK-A7B1-01A | TCGA-KK-A7B1 | GLB1|PSD2 | GLB1 | PSD2 | 3 | 5 | -1 | 1 | 14 | 8 | 8 | 0.01 | 33094983 | 139215308 | tier1 | In-frame | 7086 | NA | 0.35212 |
| BLCA | TCGA-FD-A5BR-01A | TCGA-FD-A5BR | CDK1|NRG1 | CDK1 | NRG1 | 10 | 8 | 1 | 1 | 2 | 2 | 2 | 0.75 | 62539960 | 32585467 | tier3 | In-frame | 3397 | NA | 0.37603 |
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