Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
| Showing page 245 |
first page | previous page | next page | last page |
| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| STAD | TCGA-BR-8060-01A | TCGA-BR-8060 | AHCYL1|GNAI3 | AHCYL1 | GNAI3 | 1 | 1 | 1 | 1 | 15 | 48 | 45 | 0.46 | 110527794 | 110125059 | tier1 | Out-of-frame | 677 | NA | 0.37395 |
| LGG | TCGA-QH-A6CV-01A | TCGA-QH-A6CV | NPNT|GSTCD | NPNT | GSTCD | 4 | 4 | 1 | 1 | 52 | 47 | 36 | 0.7 | 106819158 | 106744111 | tier1 | In-frame | 11702 | NA | 0.35257 |
| PRAD | TCGA-EJ-7794-01A | TCGA-EJ-7794 | TET2|KLK3 | TET2 | KLK3 | 4 | 19 | 1 | 1 | 2 | 3 | 1 | 2.4 | 106200973 | 51358191 | tier3 | 3UTR-5UTR | 17670 | NA | 0 |
| LGG | TCGA-HT-7472-01A | TCGA-HT-7472 | TET2|ADH6 | TET2 | ADH6 | 4 | 4 | 1 | -1 | 13 | 1 | 1 | 1.2 | 106111662 | 100137419 | tier4 | 5UTR-CDS | 17669 | NA | 0 |
| BRCA | TCGA-A2-A1FV-01A | TCGA-A2-A1FV | TET2|LANCL1 | TET2 | LANCL1 | 4 | 2 | 1 | -1 | 23 | 18 | 17 | 0.14 | 106164935 | 211341136 | tier1 | CDS-5UTR | 17671 | NA | 0 |
| PRAD | TCGA-KK-A8I5-01A | TCGA-KK-A8I5 | TET2|LARP7 | TET2 | LARP7 | 4 | 4 | 1 | 1 | 6 | 6 | 6 | 0.84 | 106068136 | 113565824 | tier1 | 5UTR-5UTR | 17672 | NA | 0 |
| SARC | TCGA-MB-A8JL-01A | TCGA-MB-A8JL | ADAL|C15orf43 | ADAL | C15orf43 | 15 | 15 | 1 | 1 | 8 | 8 | 7 | 0.16 | 43638178 | 45266065 | tier1 | Out-of-frame | 402 | NA | 0 |
| LUAD | TCGA-80-5608-01A | TCGA-80-5608 | SFTPB|SLC35C1 | SFTPB | SLC35C1 | 2 | 11 | -1 | 1 | 3 | 3 | 1 | 0.013 | 85885766 | 45832327 | tier4 | 3UTR-CDS | 15766 | NA | 0 |
| LUSC | TCGA-77-A5GH-01A | TCGA-77-A5GH | USP39|GGCX | USP39 | GGCX | 2 | 2 | 1 | -1 | 2 | 2 | 2 | 0.25 | 85868241 | 85786198 | tier3 | Out-of-frame | 19382 | NA | 0 |
| LIHC | TCGA-RC-A6M4-01A | TCGA-RC-A6M4 | USP39|VAMP8 | USP39 | VAMP8 | 2 | 2 | 1 | 1 | 78 | 88 | 75 | 0.75 | 85852814 | 85808699 | tier1 | In-frame | 19384 | NA | 0 |
| HNSC | TCGA-CV-7421-01A | TCGA-CV-7421 | USP39|CD8B | USP39 | CD8B | 2 | 2 | 1 | -1 | 5 | 4 | 4 | 0.01 | 85848702 | 87049497 | tier1 | Out-of-frame | 19379 | NA | 0 |
| BRCA | TCGA-C8-A12Q-01A | TCGA-C8-A12Q | USP39|DNAH6 | USP39 | DNAH6 | 2 | 2 | 1 | 1 | 3 | 11 | 8 | 0.99 | 85858069 | 84945328 | tier1 | Out-of-frame | 19380 | non-validated | 0 |
| BRCA | TCGA-E2-A1LE-01A | TCGA-E2-A1LE | USP39|ELMOD3 | USP39 | ELMOD3 | 2 | 2 | 1 | 1 | 14 | 9 | 8 | 0.059 | 85848702 | 85604467 | tier1 | In-frame | 19381 | NA | 0 |
| SKCM | TCGA-EE-A2GP-06A | TCGA-EE-A2GP | USP39|REEP1 | USP39 | REEP1 | 2 | 2 | 1 | -1 | 2 | 4 | 4 | 1 | 85846412 | 86509365 | tier3 | In-frame | 19383 | NA | 0 |
| STAD | TCGA-CG-4449-01A | TCGA-CG-4449 | INPP5D|GIGYF2 | INPP5D | GIGYF2 | 2 | 2 | 1 | 1 | 17 | 32 | 29 | 1.3 | 233944108 | 233681581 | tier1 | In-frame | 8251 | NA | 0.38212 |
| KIRC | TCGA-BP-5192-01A | TCGA-BP-5192 | MAP2K1|CUX1 | MAP2K1 | CUX1 | 15 | 7 | 1 | 1 | 7 | 3 | 3 | 1.3 | 66679765 | 101870647 | tier1 | Out-of-frame | 9832 | NA | 0.39153 |
| BRCA | TCGA-AQ-A04L-01B | TCGA-AQ-A04L | ROR2|KCNC2 | ROR2 | KCNC2 | 9 | 12 | -1 | -1 | 4 | 5 | 5 | 0.24 | 94710889 | 75445097 | tier1 | 5UTR-CDS | 14903 | NA | 0 |
| UCS | TCGA-N8-A4PM-01A | TCGA-N8-A4PM | ROR2|FAM50B | ROR2 | FAM50B | 9 | 6 | -1 | 1 | 2 | 1 | 1 | 0.28 | 94712149 | 3850023 | tier2 | CDS-5UTR | 14902 | NA | 0 |
| LIHC | TCGA-G3-A7M8-01A | TCGA-G3-A7M8 | AR|NR4A3 | AR | NR4A3 | X | 9 | 1 | 1 | 6 | 2 | 2 | 0.15 | 66863249 | 102587941 | tier1 | CDS-5UTR | 1171 | NA | 0.38165 |
| SKCM | TCGA-WE-A8ZM-06A | TCGA-WE-A8ZM | CSNK1G1|MESP1 | CSNK1G1 | MESP1 | 15 | 15 | -1 | -1 | 7 | 2 | 2 | 0.68 | 64592518 | 90293458 | tier1 | Out-of-frame | 4291 | NA | 0.37203 |
|
Showing page 245 |
first page | previous page | next page | last page |
Copyright © 2020 University of Pennsylvania. All Rights Reserved.